Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1615X
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 28 2.9
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 28 2.9
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 28 2.9
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 28 2.9
Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr... 27 5.0
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 6.7
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr... 26 8.8
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 26 8.8
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 375 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 271
+P+ V+ ++ PS +S + VTT V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 304 RDNHGSRRNYHRKLIRQHLKDASPVL--DHAICKSYPDSSKLTTSDARPSVD 155
+D H R L ++ S V+ DH +C P ++ + + A PSVD
Sbjct: 716 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 767
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 304 RDNHGSRRNYHRKLIRQHLKDASPVL--DHAICKSYPDSSKLTTSDARPSVD 155
+D H R L ++ S V+ DH +C P ++ + + A PSVD
Sbjct: 819 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 870
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -2
Query: 304 RDNHGSRRNYHRKLIRQHLKDASPVL--DHAICKSYPDSSKLTTSDARPSVD 155
+D H R L ++ S V+ DH +C P ++ + + A PSVD
Sbjct: 832 QDMHRRERQLKNMLQTLRIEGESSVVPWDHVVCHYQPPNATASANTATPSVD 883
>Z81588-2|CAB04712.1| 379|Caenorhabditis elegans Hypothetical
protein T07D10.2 protein.
Length = 379
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 392 GNLRACCLPWMW*PFLRLPLR 330
GNL +C PW+W F R L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350
>Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical
protein C34C6.3 protein.
Length = 520
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 53 SYSVTWITVVILELIHAIRTLTSDGMS 133
SY+V+WIT + IR + SDG++
Sbjct: 54 SYNVSWITPAASNSTYRIRLIDSDGLT 80
>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
protein F17C11.10 protein.
Length = 1101
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 248 ERCVAGT*PCDLQKLSRFIKINDFG 174
ER V+ + P DL RF+K N FG
Sbjct: 440 ERFVSNSSPMDLDATQRFLKYNRFG 464
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 372 PSLDVVAVSQAPSP-ESNPDSPLPVT-TMVVAETTI 271
P+ ++ SQAP P ++ P SP+ T T+ +TT+
Sbjct: 774 PATPMLQASQAPQPLQAPPQSPMETTATVTYTKTTV 809
>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
ZK430.5 protein.
Length = 1276
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 148 KTNRRRASRPKSLILMNLDNFCRSHG 225
K N +R +R + L++ + NFC+ HG
Sbjct: 1229 KDNLKR-TRKRKLLVSTIPNFCKEHG 1253
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 23 GSIYQFWFLRSYSVTWITVVILELIHAIRTL 115
G++ WF +++SV WI +V+ I +T+
Sbjct: 228 GNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,224,240
Number of Sequences: 27780
Number of extensions: 175767
Number of successful extensions: 642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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