BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1615X (401 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 0.56 AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 24 0.56 DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 5.3 DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 6.9 AB264333-1|BAF44088.1| 36|Apis mellifera ecdysone-induced prot... 21 6.9 DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 20 9.2 AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 20 9.2 AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 20 9.2 AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 20 9.2 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 24.2 bits (50), Expect = 0.56 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +1 Query: 175 PKSLILMNLDNFCRSHGQVPATHLSNVALST 267 P+ L +NL + CR HG PAT + L T Sbjct: 430 PRELEAVNLGSACRIHGS-PATTAAPPQLPT 459 >AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera ORF for hypotheticalprotein. ). Length = 998 Score = 24.2 bits (50), Expect = 0.56 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = +1 Query: 193 MNLDNFCRSHGQVPATHLSNVALSTFDGSF 282 + L N S G H+SN LS +G F Sbjct: 393 VELANKMESSGMAGRVHISNATLSFLNGEF 422 >DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine receptor alpha9subunit protein. Length = 431 Score = 21.0 bits (42), Expect = 5.3 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = +2 Query: 29 IYQFWFLRSYSVTWITVVILELIHAIRTLT 118 +Y+F R Y + T VI + + TLT Sbjct: 243 VYEFSISRHYGILHATYVIPAVTMMLLTLT 272 >DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel protein. Length = 489 Score = 20.6 bits (41), Expect = 6.9 Identities = 9/36 (25%), Positives = 22/36 (61%) Frame = -3 Query: 198 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 91 I+Q L + +IG+ + + +PS++ V+++ +S Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262 >AB264333-1|BAF44088.1| 36|Apis mellifera ecdysone-induced protein 75 protein. Length = 36 Score = 20.6 bits (41), Expect = 6.9 Identities = 7/27 (25%), Positives = 12/27 (44%) Frame = -2 Query: 277 YHRKLIRQHLKDASPVLDHAICKSYPD 197 YH + HL P +D + + P+ Sbjct: 5 YHVAQLPHHLSPNMPTMDSTVSSAKPE 31 >DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel protein. Length = 463 Score = 20.2 bits (40), Expect = 9.2 Identities = 6/16 (37%), Positives = 10/16 (62%) Frame = -3 Query: 366 LDVVAVSQAPSPESNP 319 ++V+ +S P P NP Sbjct: 365 IEVIPLSAIPEPSKNP 380 >AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. Length = 996 Score = 20.2 bits (40), Expect = 9.2 Identities = 7/17 (41%), Positives = 9/17 (52%) Frame = -1 Query: 365 WMW*PFLRLPLRNRTLI 315 W+W PF+ NR I Sbjct: 72 WLWTPFIERGPANRMYI 88 >AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1 protein. Length = 500 Score = 20.2 bits (40), Expect = 9.2 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = -3 Query: 333 PESNPDSPLP 304 P SNP SP+P Sbjct: 438 PSSNPVSPVP 447 >AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. Length = 493 Score = 20.2 bits (40), Expect = 9.2 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = +1 Query: 79 GNSRANTCN 105 GNSRANT N Sbjct: 131 GNSRANTYN 139 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 115,445 Number of Sequences: 438 Number of extensions: 2137 Number of successful extensions: 9 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 10008927 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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