Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1615X
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.56 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.56 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.9  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    21   6.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   9.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 175 PKSLILMNLDNFCRSHGQVPATHLSNVALST 267
           P+ L  +NL + CR HG  PAT  +   L T
Sbjct: 430 PRELEAVNLGSACRIHGS-PATTAAPPQLPT 459


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 193 MNLDNFCRSHGQVPATHLSNVALSTFDGSF 282
           + L N   S G     H+SN  LS  +G F
Sbjct: 393 VELANKMESSGMAGRVHISNATLSFLNGEF 422


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 29  IYQFWFLRSYSVTWITVVILELIHAIRTLT 118
           +Y+F   R Y +   T VI  +   + TLT
Sbjct: 243 VYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -3

Query: 198 IHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACIS 91
           I+Q   L  +   +IG+ + +  +PS++ V+++ +S
Sbjct: 227 IYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 262


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)
 Frame = -2

Query: 277 YHRKLIRQHLKDASPVLDHAICKSYPD 197
           YH   +  HL    P +D  +  + P+
Sbjct: 5   YHVAQLPHHLSPNMPTMDSTVSSAKPE 31


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 366 LDVVAVSQAPSPESNP 319
           ++V+ +S  P P  NP
Sbjct: 365 IEVIPLSAIPEPSKNP 380


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 365 WMW*PFLRLPLRNRTLI 315
           W+W PF+     NR  I
Sbjct: 72  WLWTPFIERGPANRMYI 88


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 333 PESNPDSPLP 304
           P SNP SP+P
Sbjct: 438 PSSNPVSPVP 447


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 79  GNSRANTCN 105
           GNSRANT N
Sbjct: 131 GNSRANTYN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,445
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)