Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1615X
(401 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 0.50
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 29 1.2
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 29 1.5
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 1.5
At1g19670.1 68414.m02452 coronatine-responsive protein / coronat... 29 1.5
At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d... 27 4.7
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati... 27 4.7
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 26 8.2
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 26 8.2
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase... 26 8.2
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 26 8.2
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 30.3 bits (65), Expect = 0.50
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 199 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 104
DS S RPS+DWF N+S + + SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
mutase family protein similar to X4 protein GI:21386798,
Y4 protein GI:21386800 from [Silene dioica]; contains
Pfam profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 157 RRRASRPKSLILMNLDNFCRSHGQVPATHLSNVALSTFDGSFCDYH 294
+R +P S+I +L CR H V +S L D S C Y+
Sbjct: 842 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYY 887
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 28.7 bits (61), Expect = 1.5
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 381 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 280
RLLPSL VV+ +P+ + P S LP + + V E
Sbjct: 84 RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 372 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 265
PS A + APSP +NP P T V++ ES
Sbjct: 39 PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74
>At1g19670.1 68414.m02452 coronatine-responsive protein /
coronatine-induced protein 1 (CORI1) identical to
coronatine-induced protein 1 (CORI1) GI:30912637 from
[Arabidopsis thaliana]
Length = 324
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -2
Query: 316 FPVTRDNHGSR-RNYHRKLIRQHLKDASPVL-DHAICKSYPDSSKLTTSDARPSVDWF*S 143
+PV HG RNY + H+ +L +CK P ++ DA ++W
Sbjct: 56 YPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASE 115
Query: 142 NKSTHPITGQSSDCMY 95
N H T +++ Y
Sbjct: 116 NLKAHLPTSVNANGKY 131
>At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 747
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 316 FPVTRDNHGSRRNYHRKLIRQHLKDASPVLDHAI--CK 209
FPV R+N G R + R+ I QH +++ V D + CK
Sbjct: 46 FPVKRENSGERVRFSREEILQH-RESVQVSDEILRRCK 82
>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
(PAUSED) contains Pfam profile: PF04150 exportin-t,
identical to PAUSED gi:30909318
Length = 988
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 228 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 67
LT + +V++ H+ RL + ++ DL+ ++PS+ V+ C +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355
>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 519
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 171 RGPPSIGFDLIKALIPSLVRVL 106
RG PS FDL+K ++P L R++
Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = -2
Query: 364 GCGSRFSGSLSGIEP*FPVTRDNHGSRRNYHRKLIRQHLKDASPVLDHAICKSYPDSSKL 185
G ++G+L + F V +R NY + +QH V+D ++ P S +
Sbjct: 360 GVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGIWAVVDVSLDSLRP--SPI 417
Query: 184 TTSDARPS 161
T S RPS
Sbjct: 418 TRSRRRPS 425
>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
(PLC2) identical to phosphoinositide specific
phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
Length = 581
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 268 KLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 152
K ++ K H + + YP +++T+S+ P V W
Sbjct: 354 KAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 304 RDNHG-SRRNYHRKLIRQHLKDASPVLDHAICKSYPDSSKLTTSD 173
R HG S RN+ R+ IR+ +PV DH KS T++D
Sbjct: 2 RGTHGGSGRNHDRRYIRRDAGIVNPVNDHP--KSEHQKEDTTSTD 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,887,621
Number of Sequences: 28952
Number of extensions: 171520
Number of successful extensions: 453
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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