BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1615X (401 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 0.50 At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 29 1.2 At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 29 1.5 At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 1.5 At1g19670.1 68414.m02452 coronatine-responsive protein / coronat... 29 1.5 At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d... 27 4.7 At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati... 27 4.7 At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 26 8.2 At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 26 8.2 At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase... 26 8.2 At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 26 8.2 >At2g07020.1 68415.m00803 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 700 Score = 30.3 bits (65), Expect = 0.50 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 199 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 104 DS S RPS+DWF N+S + + SS+ Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254 >At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase family protein similar to X4 protein GI:21386798, Y4 protein GI:21386800 from [Silene dioica]; contains Pfam profiles PF00300: phosphoglycerate mutase family, PF01535: PPR repeat Length = 1053 Score = 29.1 bits (62), Expect = 1.2 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +1 Query: 157 RRRASRPKSLILMNLDNFCRSHGQVPATHLSNVALSTFDGSFCDYH 294 +R +P S+I +L CR H V +S L D S C Y+ Sbjct: 842 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYY 887 >At3g17920.1 68416.m02282 leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam:PF00560 Length = 962 Score = 28.7 bits (61), Expect = 1.5 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -3 Query: 381 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 280 RLLPSL VV+ +P+ + P S LP + + V E Sbjct: 84 RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117 >At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical to gi_3883128_gb_AAC77827 Length = 133 Score = 28.7 bits (61), Expect = 1.5 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -3 Query: 372 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 265 PS A + APSP +NP P T V++ ES Sbjct: 39 PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74 >At1g19670.1 68414.m02452 coronatine-responsive protein / coronatine-induced protein 1 (CORI1) identical to coronatine-induced protein 1 (CORI1) GI:30912637 from [Arabidopsis thaliana] Length = 324 Score = 28.7 bits (61), Expect = 1.5 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Frame = -2 Query: 316 FPVTRDNHGSR-RNYHRKLIRQHLKDASPVL-DHAICKSYPDSSKLTTSDARPSVDWF*S 143 +PV HG RNY + H+ +L +CK P ++ DA ++W Sbjct: 56 YPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASE 115 Query: 142 NKSTHPITGQSSDCMY 95 N H T +++ Y Sbjct: 116 NLKAHLPTSVNANGKY 131 >At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 domain-containing protein similar to SP|Q03387 Eukaryotic initiation factor (iso)4F subunit P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam profiles PF02854: MIF4G domain, PF02847: MA3 domain Length = 747 Score = 27.1 bits (57), Expect = 4.7 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 316 FPVTRDNHGSRRNYHRKLIRQHLKDASPVLDHAI--CK 209 FPV R+N G R + R+ I QH +++ V D + CK Sbjct: 46 FPVKRENSGERVRFSREEILQH-RESVQVSDEILRRCK 82 >At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative (PAUSED) contains Pfam profile: PF04150 exportin-t, identical to PAUSED gi:30909318 Length = 988 Score = 27.1 bits (57), Expect = 4.7 Identities = 13/54 (24%), Positives = 29/54 (53%) Frame = -3 Query: 228 LTMRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 67 LT + +V++ H+ RL + ++ DL+ ++PS+ V+ C +++Q Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355 >At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) [Arabidopsis thaliana] SWISS-PROT:Q96321 Length = 519 Score = 26.2 bits (55), Expect = 8.2 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 Query: 171 RGPPSIGFDLIKALIPSLVRVL 106 RG PS FDL+K ++P L R++ Sbjct: 228 RGKPSPPFDLVKHVLPVLKRLV 249 >At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule-specific homeobox protein A20 nearly identical to meristem L1 layer homeobox protein A20 (AtML1) [Arabidopsis thaliana] GI:1881536, protodermal factor2 (PDF2) [Arabidopsis thaliana] GI:14276060 Length = 762 Score = 26.2 bits (55), Expect = 8.2 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = -2 Query: 364 GCGSRFSGSLSGIEP*FPVTRDNHGSRRNYHRKLIRQHLKDASPVLDHAICKSYPDSSKL 185 G ++G+L + F V +R NY + +QH V+D ++ P S + Sbjct: 360 GVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGIWAVVDVSLDSLRP--SPI 417 Query: 184 TTSDARPS 161 T S RPS Sbjct: 418 TRSRRRPS 425 >At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C (PLC2) identical to phosphoinositide specific phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana] Length = 581 Score = 26.2 bits (55), Expect = 8.2 Identities = 10/39 (25%), Positives = 19/39 (48%) Frame = -2 Query: 268 KLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 152 K ++ K H + + YP +++T+S+ P V W Sbjct: 354 KAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNYNPLVGW 392 >At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) family protein contains a Zinc finger, C3HC4 type (RING finger) signature, PROSITE:PS00518 Length = 688 Score = 26.2 bits (55), Expect = 8.2 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -2 Query: 304 RDNHG-SRRNYHRKLIRQHLKDASPVLDHAICKSYPDSSKLTTSD 173 R HG S RN+ R+ IR+ +PV DH KS T++D Sbjct: 2 RGTHGGSGRNHDRRYIRRDAGIVNPVNDHP--KSEHQKEDTTSTD 44 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,887,621 Number of Sequences: 28952 Number of extensions: 171520 Number of successful extensions: 453 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 439 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 453 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 585758608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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