Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1614
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    29   2.9  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   8.7  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 526 YLKCTHPITRPRKSPVSLFFVTTSRAGSG*FARLLPSLDVVAV 398
           +LK + P+ R   SP + F    +R GSG  + ++  L VVAV
Sbjct: 24  WLKSSRPLARGALSPAAYFRDLENRHGSGASSPIVGGLSVVAV 66


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 692 CPQTCQYHRGCGAPTARRTNATTSFL 615
           CP+TC Y  G G  T  RT+ T + L
Sbjct: 133 CPRTCGYCSGSGVVTTTRTSTTCADL 158


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 708 RLTDDMSANVSVSPRMRCTDSAAHKCNYELFNRNNFSIRY 589
           R  +++ +N++V      + SA HK NYEL    +F +RY
Sbjct: 93  RSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


>AF100656-5|AAF99963.2|  259|Caenorhabditis elegans Hypothetical
           protein F49F1.6 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = -3

Query: 782 VGPPRHSRRAPR*DFDIEPAFF*---NAGSPTICPQTCQYHRGCGAPTARRTNATTSFLT 612
           + PPR S   P  D   E A +    +      CP+TC      G P A+ T  TT   T
Sbjct: 135 LAPPRPSPTPPCFDSGNECATYTLPCDVNQKIFCPRTCGVCGSTGVPMAQTTLLTTVKPT 194

Query: 611 ATIL 600
            T++
Sbjct: 195 TTVV 198


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 424 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 320
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 60  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 164
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,104,328
Number of Sequences: 27780
Number of extensions: 376927
Number of successful extensions: 987
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)