Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1613
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.3  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   6.3  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   6.3  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 313 IYHRCGICNKKY 348
           + H+C +C+KK+
Sbjct: 193 VLHQCPVCHKKF 204


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 682 FQNILTEIYRIVSQRQMRDPPEGDVI 759
           ++ I   IY ++S   +  PP  D+I
Sbjct: 23  YKTIKQHIYSLISLSYLPGPPVNDII 48


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 682 FQNILTEIYRIVSQRQMRDPPEGDVI 759
           ++ I   IY ++S   +  PP  D+I
Sbjct: 23  YKTIKQHIYSLISLSYLPGPPVNDII 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,578
Number of Sequences: 336
Number of extensions: 3492
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)