Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1613
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.2  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 41  NHN*KVMLKEPCIVL*ICDICVQYY 115
           +H  KV+ K P I    C+I V+Y+
Sbjct: 128 HHTGKVVWKPPAIYKSFCEIDVEYF 152


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +2

Query: 428 YYRGAWAR-CWFTTSPSTC 481
           YY   W + CW  T+P+ C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +2

Query: 428 YYRGAWAR-CWFTTSPSTC 481
           YY   W + CW  T+P+ C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 96  IFVSNIIFIYGHLDVSKLTD 155
           IF+  IIFIY +  ++++TD
Sbjct: 13  IFLILIIFIYSNETIAQVTD 32


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 96  IFVSNIIFIYGHLDVSKLTD 155
           IF+  IIFIY +  ++++TD
Sbjct: 13  IFLILIIFIYSNETIAQVTD 32


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 427 VLPRRVGALLVYDIAKHLSYENVERWLPSCAIHADQNI 540
           +L R+  +   ++  K    + ++ W+P+ AIH D  I
Sbjct: 372 ILMRKAISDYTFNDTKITIPKEMKIWIPAFAIHRDSAI 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,495
Number of Sequences: 438
Number of extensions: 4269
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)