Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1611
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 181 1e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 3e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 118 1e-27
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 3e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 5e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 1e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 4e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 7e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.14
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.14
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 30 0.33
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.4
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 26 5.4
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 25 9.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.4
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos... 25 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 181 bits (440), Expect = 1e-46
Identities = 85/92 (92%), Positives = 90/92 (97%)
Frame = +2
Query: 509 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 688
IQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL E
Sbjct: 136 IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILME 195
Query: 689 RGYSFTTTAEREIVRDIKEKLCYVAFDFEQEM 784
RGY+F+TTAEREIVRDIKEKLCYVA DFEQE+
Sbjct: 196 RGYTFSTTAEREIVRDIKEKLCYVALDFEQEL 227
Score = 180 bits (439), Expect = 2e-46
Identities = 80/88 (90%), Positives = 83/88 (94%)
Frame = +3
Query: 246 GTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 425
G +DSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 426 APLNPKANREKMTQIMFETFNTPAMYVA 509
APLNPK+NREKMTQI+FETFN PA YVA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVA 135
Score = 102 bits (244), Expect = 7e-23
Identities = 44/49 (89%), Positives = 48/49 (97%)
Frame = +1
Query: 109 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQK 50
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (288), Expect = 3e-28
Identities = 53/89 (59%), Positives = 70/89 (78%)
Frame = +2
Query: 509 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 688
IQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L
Sbjct: 136 IQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLR 195
Query: 689 RGYSFTTTAEREIVRDIKEKLCYVAFDFE 775
+GY+F TA+ E VR++KEKLCYV++D E
Sbjct: 196 KGYAFNRTADFETVREMKEKLCYVSYDLE 224
Score = 98.3 bits (234), Expect = 1e-21
Identities = 40/93 (43%), Positives = 65/93 (69%)
Frame = +3
Query: 231 RDGRYGTEDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 410
+ G +D VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 411 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVA 509
+LLTE P+NP ANREKM + MFE + +YVA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVA 135
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 115 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 219
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 118 bits (284), Expect = 1e-27
Identities = 52/92 (56%), Positives = 73/92 (79%)
Frame = +2
Query: 509 IQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 688
+Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L +
Sbjct: 141 LQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRK 200
Query: 689 RGYSFTTTAEREIVRDIKEKLCYVAFDFEQEM 784
G+ ++AE+EIVR+IKEK CYVA DF E+
Sbjct: 201 SGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
Score = 97.1 bits (231), Expect = 3e-21
Identities = 42/90 (46%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Frame = +3
Query: 252 EDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEA 428
+D +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 54 KDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEP 113
Query: 429 PLNPKANREKMTQIMFETFNTPAMYVASKP 518
PL N+EK+ + +ET N PA+ + +P
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 127 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKTL 261
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QK +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.5 bits (222), Expect = 3e-20
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 431
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 432 LNPKANREKMTQIMFETFNTPAMYVA 509
LNP NRE +IMFE+FN +Y+A
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIA 158
Score = 68.5 bits (160), Expect = 1e-12
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Frame = +2
Query: 509 IQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 664
+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T
Sbjct: 159 VQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTY 218
Query: 665 YLMKILTERGY--SFTTTAEREIVRDIKEKLCYVAFDFEQEMA 787
++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 219 FVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFS 256
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 127 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 210
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.9 bits (146), Expect = 5e-11
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = +3
Query: 297 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 476
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 477 ETFNTPAMYVASK 515
E+ PA Y+A +
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 112 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 213
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 512 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 691
Q + +ASG+ T ++D G S IY+G+ L +G + D L + L ++
Sbjct: 135 QETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDK 194
Query: 692 GY 697
+
Sbjct: 195 NF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 1e-10
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Frame = +3
Query: 231 RDGRYGTEDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 407
RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 408 PVLLTEAPLNPKANREKMTQIMFETFNTPAM 500
P+ +TE NP R MT+++FE +N P++
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSV 147
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +2
Query: 509 IQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 682
I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 151 IDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLF 210
Query: 683 TERGYSFTTTAEREIVRDIKEKLCYVAFDFEQEMA 787
+ SF + C+V+ D+ ++A
Sbjct: 211 QIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIA 245
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 127 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 222
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 60.1 bits (139), Expect = 4e-10
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +2
Query: 554 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 733
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 734 DIKEKLCYVAFDFEQEM 784
+IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +3
Query: 255 DSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 428
+ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109
Query: 429 PLNPKANREKMTQIMFETFNTPAMYVASK 515
NP++ R+++ + FE + PA Y+ +
Sbjct: 110 SWNPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 112 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 213
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +2
Query: 512 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 691
+ ++ LYA G G+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 183 EPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRES 242
Query: 692 GYSFTTTAEREIVRDIKE 745
+ ++ + DI E
Sbjct: 243 LPTLKSSGQYVSKEDITE 260
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 312 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 479
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 480 TFNTPAMYVASKP 518
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.14
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 372 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 494
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +2
Query: 512 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 691
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 692 GYSF 703
+ +
Sbjct: 340 HFPY 343
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 30.3 bits (65), Expect = 0.33
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +3
Query: 375 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASKPCSRCTRPVVPPV 554
Y+EL +A +E P L P PK + + N A + KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKVASKLKGVVAGGKENNIASF--QKPSSKATRPYIPSY 78
Query: 555 SCWTPATVSPTPCP 596
+ T +V P P P
Sbjct: 79 TRLT-YSVPPLPIP 91
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 516 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 620
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 516 PCSRCTRPVVPPVSCWTPATVSPTPCPST 602
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 242 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 108
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 537 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 629
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 414 LLTEAPLNPKANREKMTQIMFETFN 488
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 248 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 156
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +2
Query: 407 PSPAH*GSPQPQGQQ----REDDPDHVRNIQHARHVRRIQAVLSLYASGRTTGIVLD 565
P P H G+ +G++ RED P++ R ++ + + I + Y TG+ D
Sbjct: 312 PKPVH-GTSNGKGKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPSLLTGVTKD 367
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 559 HDTGGTTGRVQREHGLDATYMAGVLNVSNMIW 464
H T T GR R +DA Y+A ++ S W
Sbjct: 179 HGTNPTAGRSLRGWAIDAKYVAENIHSSASTW 210
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 510 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWT*PV 650
S+ S T P PP + T PA SP P P +T H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948
>SPCC16C4.17 |mug123||meiotically upregulated gene
Mug123|Schizosaccharomyces pombe|chr 3|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 274 SSPT*ESSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 113
SSP+ +SS S G RSR + H + RP + S + P +L
Sbjct: 61 SSPSIKSSSQNGKSSSKGLGGMRSRVFSSQHHGVYHTRPASLHSRTMAPQHTIL 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,166
Number of Sequences: 5004
Number of extensions: 75541
Number of successful extensions: 270
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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