Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1609
         (838 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XWR2 Cluster: Putative uncharacterized protein; n=2; ...    35   2.2  
UniRef50_Q38BZ9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q8IBZ0 Cluster: Putative uncharacterized protein MAL7P1...    33   8.9  
UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE...    33   8.9  

>UniRef50_Q4XWR2 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 135

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
 Frame = +3

Query: 360 FYLLLPFHISLINVIKY*YALTQLLENSYTSSAN-ASLDFMNIASFISSKVNLIEVHSTL 536
           F+    F++SL       Y  ++++ENS   + +  + + MN+   +S + N     + L
Sbjct: 7   FFFFFFFNVSLFVCRTAKYEDSEIIENSTVKNNDITNKNIMNVLKSVSLEENKKTEKNIL 66

Query: 537 HTFRFYCRIPNVFKNDSD*QITYI------SKKKKPRKFVEVNTNYKLRKK 671
           +   +Y     +    +  Q+ Y       + KKKP+   +VN  Y  RKK
Sbjct: 67  YDLSYYMNFLKILSGINSQQMEYEGIINIDNTKKKPKNIKDVNIIYSSRKK 117


>UniRef50_Q38BZ9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 717

 Score = 33.5 bits (73), Expect = 6.7
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
 Frame = +3

Query: 354 FRFYLLLPFHISLINVIKY*YALT-QLLENSYTSSANASLDFMNIASFISSKVNLIEVHS 530
           F F+L L F +  I V+ + Y +T  LL+N +    +  L ++ + +   S +N I    
Sbjct: 415 FEFFLQLAFGV--IYVLSHLYHMTPNLLDNIFMKKCSIPLSYIKLPTRRLSYLNFICTEF 472

Query: 531 TL---HTFRFYCRIPNVFK 578
            L     F F CR+P+V++
Sbjct: 473 GLLLDDLFAFSCRVPSVYR 491


>UniRef50_Q8IBZ0 Cluster: Putative uncharacterized protein MAL7P1.30;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            MAL7P1.30 - Plasmodium falciparum (isolate 3D7)
          Length = 3267

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = +1

Query: 730  KIYDDNNNNKFYGSCAKTKVINYFLYRKSRYI 825
            KI DDNNNN  Y     TKVIN FL  K  Y+
Sbjct: 1877 KIGDDNNNNNIY--IIITKVINNFLCIKESYV 1906


>UniRef50_Q8SSE5 Cluster: DNA REPLICATION LICENSING FACTOR OF THE
           MCM FAMILY; n=1; Encephalitozoon cuniculi|Rep: DNA
           REPLICATION LICENSING FACTOR OF THE MCM FAMILY -
           Encephalitozoon cuniculi
          Length = 708

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -1

Query: 199 RKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQEKEQGVFFS 68
           RK L S+R  GD + IL+ G  G+ KS LLSF ++  E+G++ S
Sbjct: 348 RKELGSSRLRGDIN-ILLAGDPGISKSQLLSFIHRTSERGMYTS 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,391,399
Number of Sequences: 1657284
Number of extensions: 12772777
Number of successful extensions: 27292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27261
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72963732758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)