Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1609
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   6.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.1  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -2

Query: 735 YFKVTLFLGDSRFSFDFGLGSIFFSICNLY*PLQIS*VFSFLKCRLFVSQNHF*KRLEFY 556
           Y  VT ++  +    D    +I   +C+LY  LQI+ + ++        +N F K L+ Y
Sbjct: 142 YLSVTCYVTYAWSPIDHTESNIINDMCSLYYILQITLIVNY----ALALKNRF-KELQKY 196

Query: 555 NKI*KYVTYYG 523
            KI     Y G
Sbjct: 197 LKIETSCRYVG 207


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +1

Query: 361 FICYCRFTFH*LMSLNINMH 420
           ++ +C F FH ++ +N+ +H
Sbjct: 667 WLFHCHFLFHIVIGMNLIIH 686


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 237 FQPFFCPRFLRYRERFYAVIVNRAMTPPF*FTGF 136
           F   FC     Y+     +++N+ +TP F F  F
Sbjct: 70  FGYLFCASLSFYKAFKIGILLNQLITPLFFFHSF 103


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/42 (19%), Positives = 21/42 (50%)
 Frame = +3

Query: 489 SFISSKVNLIEVHSTLHTFRFYCRIPNVFKNDSD*QITYISK 614
           ++ +++  L+ V   LH FR Y ++  +        + ++S+
Sbjct: 641 NYTTTEKELLGVIFALHKFRIYIQVTKIIIRTDHQALKFLSR 682


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 300 IRTL*I*IYRNTIMYYLPSFI 238
           +RTL I +YRN   + +PS +
Sbjct: 564 LRTLKIGVYRNIKNFNIPSIL 584


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,291
Number of Sequences: 336
Number of extensions: 3829
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)