Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1609
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.9  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.4  
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    26   7.6  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 348 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIASFIS 500
           T+F  Y   PF I  +N+I      T++  N   +   A +D++N A  +S
Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGLS 309


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -1

Query: 265 DYVLPTF--IYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQE 92
           D+ LP    IY    F+PQ   + R        P  +  +L+  I+G+ K  + S    E
Sbjct: 451 DHQLPRSWAIYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLE 510

Query: 91  KEQGVF 74
           K  GVF
Sbjct: 511 KAGGVF 516


>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 541 VCNVLWTSIKFTLELMKLAIFIKSK 467
           +C+V W  + FTL    L ++  SK
Sbjct: 44  ICDVFWLKLSFTLRYSTLQVYNLSK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,034
Number of Sequences: 5004
Number of extensions: 59220
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)