BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1609 (838 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 28 1.9 SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 4.4 SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 26 7.6 >SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 589 Score = 27.9 bits (59), Expect = 1.9 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 348 TLFRFYLLLPFHISLINVIKY*YALTQLLENSYTSSANASLDFMNIASFIS 500 T+F Y PF I +N+I T++ N + A +D++N A +S Sbjct: 259 TMFSCYCEEPFTIEPVNIISEHNGCTRVTPNLNPTCFKADIDYLNEACGLS 309 >SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 583 Score = 26.6 bits (56), Expect = 4.4 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -1 Query: 265 DYVLPTF--IYFPTFFLPQVSTISRKVLRSNRQPGDDSAILIYGILGLLKSTLLSFHYQE 92 D+ LP IY F+PQ + R P + +L+ I+G+ K + S E Sbjct: 451 DHQLPRSWAIYVREAFVPQNHPVLRAPSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLE 510 Query: 91 KEQGVF 74 K GVF Sbjct: 511 KAGGVF 516 >SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces pombe|chr 1|||Manual Length = 171 Score = 25.8 bits (54), Expect = 7.6 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -1 Query: 541 VCNVLWTSIKFTLELMKLAIFIKSK 467 +C+V W + FTL L ++ SK Sbjct: 44 ICDVFWLKLSFTLRYSTLQVYNLSK 68 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,011,034 Number of Sequences: 5004 Number of extensions: 59220 Number of successful extensions: 146 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 146 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 412451140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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