Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1609
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65550.1 68414.m07436 xanthine/uracil permease family protein...    29   5.1  
At5g37415.1 68418.m04501 MADS-box family protein contains Pfam p...    28   6.7  

>At1g65550.1 68414.m07436 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 541

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 338 VPTYL*MNKLIRELELFKFEFTEIRLCITYLHLFSNLFSAPGFYDIAKGSTQ 183
           +P +L M K +  L+  + +   + LCI  + LF+ L ++ G YD    +TQ
Sbjct: 213 LPRFLKMKKGVMILDGSRCDRYGMILCIPLVWLFAQLLTSSGVYDHKSHTTQ 264


>At5g37415.1 68418.m04501 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL105
          Length = 242

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 468 LDFMNIASFISSKVNLIEVHSTL----HTFRFYCRIPNVFKNDSD*QITYISKKKKPRKF 635
           LD  ++AS  S   +L     TL    H      +IPN+F N+++ Q +++S  +     
Sbjct: 143 LDHQSLASIYSLNQSLNPSQFTLFLYNHGDNTMSQIPNMFMNNNNFQHSFVSNTQDYSAL 202

Query: 636 VE-VNTNYKL 662
            E VN NY L
Sbjct: 203 QESVNNNYGL 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,387
Number of Sequences: 28952
Number of extensions: 273465
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)