Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1608
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 96 5e-21
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 27 2.5
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 27 3.3
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 27 4.4
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 4.4
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 5.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 5.8
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 5.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 5.8
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 5.8
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 7.6
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 96.3 bits (229), Expect = 5e-21
Identities = 40/90 (44%), Positives = 64/90 (71%)
Frame = +1
Query: 493 KKIKFKSIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQI 672
+++ +S + LGE+K Q+++NF + Y++++ +PVKRG FIEFR+ M+NI PVGR+ N
Sbjct: 90 QQLASQSFIAWLGEEKYQKLVNFCLHYIADLDIPVKRGTFIEFRNGMINISPVGRNANTE 149
Query: 673 ERDQFSEYDSKHKVRHQFVEALQSKFKDSG 762
ER++F +D K+R V+ L+ KFKD G
Sbjct: 150 ERNEFERFDKGRKIRATMVDVLREKFKDYG 179
Score = 70.5 bits (165), Expect = 3e-13
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 266 KVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMG--GEDVV 439
K L LFDVDGTLT R ++ E L ++ V +G V GSD K EQ+ GE+V+
Sbjct: 13 KTLVLFDVDGTLTPARLSVSPEMLE-TLQNLRKVVAIGFVGGSDLSKQQEQLSVNGENVI 71
Query: 440 SNFNYVFSENGLVHHKNGKKLSSRA 514
+F+Y F+ENGL ++ G++L+S++
Sbjct: 72 DSFDYAFAENGLTAYRYGQQLASQS 96
Score = 42.7 bits (96), Expect = 6e-05
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +2
Query: 782 QISIDVFPIGWDKTYCLNH 838
QIS DVFP GWDKTYCL H
Sbjct: 187 QISFDVFPAGWDKTYCLQH 205
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 381 NPTSTFDFTSSRMNLLNSSVIFWRGFVN 298
NP+STFD +++ N N++ F F N
Sbjct: 124 NPSSTFDMSTNLFNSKNANTSFTNAFSN 151
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 112 LKFGVYCYGLTCLSEVLALDVLWWCP 189
LK G LTC S V+ DV WW P
Sbjct: 729 LKCGALGLNLTCASRVILCDV-WWNP 753
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 504 LNFFPFL*CTSPFSLNT*LKLDTTSSPPICSEIFI*SEPLTNPTSTFDFTSSR 346
+NF P + FSLN LK + PP+ S + TNP S + R
Sbjct: 569 VNFAPKDWLLNGFSLNGVLKYQSLLKPPVLSHDMLVYNLATNPASEISVSELR 621
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +2
Query: 284 DVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGGEDVVSNFNYVFS 463
DV GT Q EE L ++ + DV + D + E VVSN +
Sbjct: 440 DVKGTAQSVEQAFIEE-TDIALPDI-ALPDVATPTADDQDPSTAATNEESVVSNEDRTSK 497
Query: 464 ENGLVHHKNGKK 499
+ G HH++ KK
Sbjct: 498 KAGKKHHRHHKK 509
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 4.4
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -3
Query: 580 WTCNPWRSLLPLAVFV 533
WT N W++LLP++ ++
Sbjct: 27 WTFNKWKALLPVSAYI 42
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 834 FKQYVLSHPIGNTSILICLLEQTLTRVFELALKCFNKLV 718
F Y + I NTS+L+C L + EL + F+ +V
Sbjct: 171 FSIYSCAEKISNTSLLLCTLPWVRSLYKELMTRIFDGIV 209
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 194 IDRSKIATKIQTSFTF*DNYASQKKVLY----LFDVDGTLTKPR 313
+DR+ A IQTS ++ D+ ++ + Y + + GT TKP+
Sbjct: 943 LDRNSYAESIQTSRSYNDDLIARDPIAYVGTDMTNAFGTTTKPK 986
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 202 PVDK*DTTREHQVPTLHSDTSNRNSKHQTSVQRTDKL 92
P+ + D+ EH P H+++ N S+H T R + +
Sbjct: 183 PIHRIDS--EHNEPEYHTESKNEESEHNTKSIREEPI 217
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 198 SISRTPPENIKCQHFTQTRQTVTVNTKLQYRELINFNNASYRHQTCPYLL 49
SI N+K +T T T+ N L Y IN+ Y+H YL+
Sbjct: 247 SIDGCEYNNVKALVWTTTPWTIPSNLALSYHPEINY--GLYQHNNSIYLM 294
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -3
Query: 361 FYLVKNEPPEFFCNFLARFCQRSVNIEQIQNFLLTSIIVSKGETSLNFG 215
F ++KN PP++ L + ++IE++ L +++ E + N G
Sbjct: 419 FSVIKNLPPDYAWGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIG 467
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 7.6
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -3
Query: 298 RSVN-IEQIQNFLLTSIIVSKGETSLNFGGN-FGPVDK*DTTREHQVPTLHSDTSNR 134
RS+N I+Q+ FL+ + I +K E ++ G F VDK + + VPT T ++
Sbjct: 388 RSINAIQQLPCFLIDTGISAK-EYDFSYDGTVFATVDKDALIKIYTVPTTFPSTPDK 443
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,607
Number of Sequences: 5004
Number of extensions: 75878
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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