Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1608
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1626 + 34863691-34863762,34863895-34863939,34864047-348641...    98   7e-21
07_03_0815 + 21707061-21707112,21707394-21708286,21709289-217094...    30   2.6  
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189...    29   4.6  
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743...    29   4.6  
11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541...    29   6.1  

>04_04_1626 +
           34863691-34863762,34863895-34863939,34864047-34864113,
           34864234-34864310,34864570-34864605,34864687-34864742,
           34864816-34864915,34864995-34865090,34865167-34865256,
           34865466-34865517,34866101-34866156
          Length = 248

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 39/81 (48%), Positives = 61/81 (75%)
 Frame = +1

Query: 508 KSIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQIERDQF 687
           +S+ + LG+ +L+E INF + Y++++ +P+KRG FIEFRS MLN+ P+GR+C+Q ERD+F
Sbjct: 87  QSLKSFLGDDQLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEF 146

Query: 688 SEYDSKHKVRHQFVEALQSKF 750
            +YD  H +R + V  L+ KF
Sbjct: 147 EKYDKVHNIRPKMVSVLREKF 167



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 42/82 (51%), Positives = 62/82 (75%)
 Frame = +2

Query: 269 VLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGGEDVVSNF 448
           VL LFDVDGTLT PR+ +T E  +F + +++  V VG+V GSD +KISEQ+G + V +++
Sbjct: 9   VLALFDVDGTLTAPRKVVTPEMLQF-MKQLREHVTVGVVGGSDLVKISEQLG-KSVTTDY 66

Query: 449 NYVFSENGLVHHKNGKKLSSRA 514
           +Y FSENGLV HKNG+ + +++
Sbjct: 67  DYCFSENGLVAHKNGELIGTQS 88



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 782 QISIDVFPIGWDKTYCLNH 838
           QIS DVFP GWDKTYCL +
Sbjct: 179 QISFDVFPQGWDKTYCLRY 197


>07_03_0815 +
           21707061-21707112,21707394-21708286,21709289-21709459,
           21709880-21710143,21710404-21710421
          Length = 465

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 620 NSMKLPLLTGNLMLD-M*PMAKFIT-SCSFCSPKWLTML 510
           N M L  + G L L+ + P  KF+T SC FCS  WL  +
Sbjct: 200 NWMNLSAVRGLLRLNAVVPRLKFLTVSCCFCSSTWLVAM 238


>08_02_0632 +
           19515234-19515374,19515489-19515656,19518907-19518993,
           19519551-19519685,19519778-19519882,19519968-19520059,
           19520147-19520252,19520320-19520424,19520516-19520929
          Length = 450

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 316 KNYRRIQEVHS*RGKIKSGCRIGQWFRLYEDFRTNGRRGRR--VQFQLR 456
           KNYR  Q +   R +    C+  +    Y DF+ N RR R   V FQLR
Sbjct: 86  KNYRNYQNLSYAREEALKDCKKVEKDSPYYDFQYNTRRARPSIVHFQLR 134


>07_03_0601 -
           19872780-19873099,19873148-19873151,19874196-19874357,
           19874429-19874617,19874687-19875010,19875103-19875378,
           19875436-19875478,19876110-19876188,19876473-19876555,
           19876708-19876782,19877324-19877490,19877960-19878370
          Length = 710

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 826 VCLVPSNWEHINTDLPPRANFNPSL 752
           VCL+   W+     LPPRA F+P++
Sbjct: 183 VCLMNVQWQKRGFPLPPRAYFDPAI 207


>11_01_0665 -
           5413561-5413593,5413785-5413907,5414020-5414259,
           5414564-5415184
          Length = 338

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 496 KIKFKSIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFI 615
           KIK  SI  H G+Q   + I FA GY S +   +K+ + I
Sbjct: 294 KIKTNSIEFHGGKQIPFDAIVFATGYKSTVNTWLKKNSII 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,585,824
Number of Sequences: 37544
Number of extensions: 429298
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)