Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1608
         (840 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   3e-23
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_20514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score =  106 bits (254), Expect = 3e-23
 Identities = 47/90 (52%), Positives = 63/90 (70%)
 Frame = +1

Query: 493 KKIKFKSIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQI 672
           K +  ++I   LGE  +QE+I+F + YMSNIK+P KRG FIEFR  ++N+ P+GR+C Q 
Sbjct: 84  KLLAIQNIKKFLGEDSIQELIDFCLSYMSNIKIPKKRGTFIEFRHGLINVSPIGRNCTQE 143

Query: 673 ERDQFSEYDSKHKVRHQFVEALQSKFKDSG 762
           ER +F EYD  H VR +FVEAL+ KF   G
Sbjct: 144 ERIEFFEYDKVHNVRGKFVEALKEKFPHLG 173



 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 42/83 (50%), Positives = 57/83 (68%)
 Frame = +2

Query: 257 SQKKVLYLFDVDGTLTKPRQKITEEFRRFILDEVKSKVDVGLVSGSDYMKISEQMGGEDV 436
           + + +L LFDVDGT+T  R  I  E R  ++ E++ KV +GLV GSD  K+ EQMGGEDV
Sbjct: 6   NDRNILCLFDVDGTVTPSRLVIQPEMRE-LMAELRKKVKIGLVGGSDQCKVEEQMGGEDV 64

Query: 437 VSNFNYVFSENGLVHHKNGKKLS 505
              ++Y F ENGLV +K+GK L+
Sbjct: 65  TKLYDYFFPENGLVAYKDGKLLA 87



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 782 QISIDVFPIGWDKTYCLNH 838
           QIS DVFP GWDKT+CL H
Sbjct: 181 QISFDVFPKGWDKTFCLRH 199


>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +1

Query: 517 VNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQIERD--QFS 690
           +N+L EQK +         + +++L     N ++FR +   I  + +  NQ+ER+  +  
Sbjct: 386 INYLKEQKKELETK-----VQSLELKSLSSNSLDFRVAKEKISDLEQKVNQLEREKSRLL 440

Query: 691 EYDSKHKVRHQFVEALQSKFKDS 759
           E +++ KVR   +E+ +S+  DS
Sbjct: 441 EENAEFKVRMDELESEKSELSDS 463


>SB_19259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 387 LTNPTSTFDFTSSRMNLLNSSVIFWRGFVN 298
           LT    TF  T   +N++  +V++WR FVN
Sbjct: 305 LTPVAITFAITMLPLNMMRITVLYWRDFVN 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,330,087
Number of Sequences: 59808
Number of extensions: 515335
Number of successful extensions: 1134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)