Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1608
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82268-3|CAB05198.2|  225|Caenorhabditis elegans Hypothetical pr...   111   5e-25
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti...    29   4.1  
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti...    29   4.1  
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti...    29   4.1  
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform...    29   4.1  
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform...    29   4.1  
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.    29   4.1  
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo...    29   4.1  
Z79694-3|CAB01962.3|  594|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AY387697-1|AAR26326.1|  594|Caenorhabditis elegans SOL-1 protein.      28   7.2  

>Z82268-3|CAB05198.2|  225|Caenorhabditis elegans Hypothetical
           protein F52B11.2 protein.
          Length = 225

 Score =  111 bits (268), Expect = 5e-25
 Identities = 49/85 (57%), Positives = 66/85 (77%)
 Frame = +1

Query: 508 KSIVNHLGEQKLQEVINFAMGYMSNIKLPVKRGNFIEFRSSMLNICPVGRSCNQIERDQF 687
           +SI   +G+ KLQE+INFA+ YMS+I+LPVKRGNF+EFR+ M+N+ P+GRSC+Q ER QF
Sbjct: 62  QSIQKAIGDAKLQELINFALRYMSDIQLPVKRGNFVEFRNGMINLSPIGRSCSQEERMQF 121

Query: 688 SEYDSKHKVRHQFVEALQSKFKDSG 762
            E+D KH +R +F E L+ KF   G
Sbjct: 122 VEFDKKHGIRQKFTEQLREKFGQYG 146



 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
 Frame = +2

Query: 335 RRFILDEVKSKVDVGLVSGSDYMKISEQMGGED---VVSNFNYVFSENGLVHHK 487
           R F++ E + +V + +V GSD+ KI+EQ+   D   ++S F+Y FSENGL   K
Sbjct: 2   REFLI-EARKRVPLAIVGGSDFKKITEQLADHDKDLLLSLFDYTFSENGLYGFK 54



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 782 QISIDVFPIGWDKTYCLNH 838
           QIS+DVFP GWDKT+CL +
Sbjct: 154 QISVDVFPTGWDKTFCLQY 172


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 493 KKIKFKSIVNHLGEQ---KLQEVINFAMGYMSNIKLPVKRGNFIEFR 624
           KK+  KS+V HLG+Q     +E+ NF M    +  + V++G     R
Sbjct: 418 KKMTMKSLVKHLGDQFNIPEEELANFDMSAFVDNAIKVEKGEIATLR 464


>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform d protein.
          Length = 1058

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 287 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 327


>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform c protein.
          Length = 1211

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 287 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 327


>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
           protein protein1, isoform a protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 322 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362


>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
           protein.
          Length = 1133

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 322 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362


>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
           protein.
          Length = 1128

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 322 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362


>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
          Length = 1058

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 287 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 327


>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
           A protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 378 DWSVVQII*RFPNKWAERTSCPISTTYSVKMDWCIIRTEKN 500
           DW ++Q I    N W     CP S    +K D+ ++   +N
Sbjct: 322 DWPIIQFIPLNQNIWNSIPQCPHSVAVLLKHDFMVLDLNQN 362


>Z79694-3|CAB01962.3|  594|Caenorhabditis elegans Hypothetical
           protein C15A11.3 protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 180 PENIKCQHFTQTRQTVTVNTKLQYRELINFNNASYRHQTCPYLLFFHY 37
           P N+ C++    R    V+   +Y ++  FN      Q+  Y+LF +Y
Sbjct: 459 PRNLYCEYIFHGRNDQVVHIHFEYFDIEGFNQCDETTQS-DYILFSNY 505


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 492 PFL*CTSPFSLNT*LKLDTTSSPP 421
           P L  ++PF+LN  +K+ TT SPP
Sbjct: 223 PILSLSNPFTLNPLMKMFTTPSPP 246


>AY387697-1|AAR26326.1|  594|Caenorhabditis elegans SOL-1 protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 180 PENIKCQHFTQTRQTVTVNTKLQYRELINFNNASYRHQTCPYLLFFHY 37
           P N+ C++    R    V+   +Y ++  FN      Q+  Y+LF +Y
Sbjct: 459 PRNLYCEYIFHGRNDQVVHIHFEYFDIEGFNQCDETTQS-DYILFSNY 505


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,430,790
Number of Sequences: 27780
Number of extensions: 415083
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)