Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1608
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.1  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 DGTLTKPRQKITEEFRRFI 346
           D   T+ R+++TE  RRF+
Sbjct: 429 DFKTTRTREQVTEALRRFV 447


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 DGTLTKPRQKITEEFRRFI 346
           D   T+ R+++TE  RRF+
Sbjct: 344 DFKTTRTREQVTEALRRFV 362


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 DGTLTKPRQKITEEFRRFI 346
           D   T+ R+++TE  RRF+
Sbjct: 663 DFKTTRTREQVTEALRRFV 681


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 528 G*TKTARGNKLRHGLHVQH 584
           G T T+ G +L HG+  QH
Sbjct: 180 GTTTTSTGTRLLHGILSQH 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,152
Number of Sequences: 438
Number of extensions: 5399
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)