Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1607
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.6  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.7  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.2  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 600 RSHDSLCILCADVPR 644
           RSHD LC +C  V R
Sbjct: 518 RSHDKLCDVCDSVNR 532


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 719 FHLSAHFFENAANITLTSGYFFLCSSRHV 633
           F+++       AN+ ++ GY   C SR V
Sbjct: 526 FYIACGIMILVANVAISFGYLISCVSRSV 554


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 719 FHLSAHFFENAANITLTSGYFFLCSSRHV 633
           F+++       AN+ ++ GY   C SR V
Sbjct: 526 FYIACGIMILVANVAISFGYLISCVSRSV 554


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = +2

Query: 161 AATTESPASFATAEP 205
           +ATTE+PA+++++ P
Sbjct: 26  SATTEAPAAYSSSSP 40


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = +2

Query: 161 AATTESPASFATAEP 205
           +ATTE+PA+++++ P
Sbjct: 26  SATTEAPAAYSSSSP 40


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 597 PRSHDSLCILCAD 635
           PR  + LC++C D
Sbjct: 181 PRQQEELCLVCGD 193


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 387 PYSTKLLNQYSSNNKLYKNTFKLFSNNRYRQ 479
           P    L+  Y  +NKL   T  LF N  + Q
Sbjct: 245 PVELSLMQLYLGHNKLLNATKDLFGNMPHLQ 275


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 550 TVNKARMPRSRPYNKPRGRMTAY 618
           T   ARM R R YN P  +   Y
Sbjct: 338 TQGVARMSRGRQYNYPNPQQQYY 360


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 550 TVNKARMPRSRPYNKPRGRMTAY 618
           T   ARM R R YN P  +   Y
Sbjct: 286 TQGVARMSRGRQYNYPNPQQQYY 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,909
Number of Sequences: 336
Number of extensions: 1892
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)