Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1607
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 41 0.001
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 40 0.002
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 40 0.003
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 38 0.007
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 36 0.027
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 35 0.082
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 34 0.14
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 34 0.14
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124... 33 0.25
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 31 0.77
03_01_0185 - 1485023-1485733 30 2.3
06_01_0363 - 2588356-2588532,2588612-2588737,2588811-2588888,258... 29 3.1
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 29 5.4
01_06_0626 + 30701538-30701939 29 5.4
04_04_0887 + 29095087-29096166 28 7.1
07_03_0334 + 16896979-16897212,16897521-16897564,16897803-168978... 28 9.4
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001 28 9.4
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490... 28 9.4
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 592 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFL 753
KP+ +A+ F+ R+E++ +PD + AA SK E+W MSE+EK ++
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQAAHPDNKSV-AAVSKAAGEKWRAMSEQEKAPYV 84
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/48 (35%), Positives = 33/48 (68%)
Frame = +1
Query: 610 TAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFL 753
TA+ F+ R+E+K ++PD + +A +K+ ERW +MS+++K+ +L
Sbjct: 97 TAFFLFMSDFRKEYKAEHPDNKSV-SAVAKEGGERWKSMSDEDKKPYL 143
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/53 (30%), Positives = 33/53 (62%)
Frame = +1
Query: 592 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 750
+P+ TA+ +F++ R+ +K++ P V + K C E+WNTM+ +E+ ++
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVKSM-QEVGKACGEKWNTMTFEERVKY 99
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +1
Query: 592 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 750
KP+ +T + F+ R ++ +K+P+ + AA +K E+W MS++EK ++
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGV-AAVTKAAGEKWRAMSDEEKAQY 75
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 556 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEK 735
+K + + + N P+ MT + +F R K PD+ +KK E W M+ +
Sbjct: 586 DKRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPT--TEIAKKLGEMWQKMTGE 643
Query: 736 EKQRFLR 756
EKQ +++
Sbjct: 644 EKQPYIQ 650
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 34.7 bits (76), Expect = 0.082
Identities = 13/48 (27%), Positives = 31/48 (64%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSE 732
NKP+ +A+ F++ R+++K+K+P+V + + K ++W +M++
Sbjct: 33 NKPKRPPSAFFVFMEQFRKDYKEKHPNVKQV-SVIGKAGGDKWKSMTD 79
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 35 RKRSKQSTSERYSTESSVDPTT-TAAGAKSNYSTATKSITTAVAATTESPASFATAEP 205
R+ +K+ST + S+ S AA A ++ S+ T + TTA ++ +PA+ A A+P
Sbjct: 144 RRNTKRSTKKSSSSSSRQGGGAGNAAAAATSSSSTTSTSTTATTSSAAAPAAAAAADP 201
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +1
Query: 559 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 738
K + + + N P+ + + +F + R K P+++ +KK ERW M+ +E
Sbjct: 546 KRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELAT--TEIAKKLGERWQKMTAEE 603
Query: 739 KQRFL 753
KQ ++
Sbjct: 604 KQPYV 608
>02_03_0176 +
16010806-16011095,16011983-16012061,16012389-16012464,
16012541-16012630,16012878-16013031,16013172-16013181,
16013240-16013407,16014087-16014485,16014580-16014990
Length = 558
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 741
N P+ + Y FF Q ++H+K P+ SK ERWN + ++K
Sbjct: 374 NHPKPNRSGYNFFFQ---DQHRKLKPEYPGQDRLISKMIGERWNNLGPEDK 421
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 31.5 bits (68), Expect = 0.77
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 17 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFA 193
AE++++ + K++ ER T+ + AA A S ST T + VAA +P + A
Sbjct: 487 AEALEALELEKKTVEERRKTKEETAAVSGAADAASGVTSTVTPAAGAGVAAGAAAPGAGA 546
Query: 194 TA 199
TA
Sbjct: 547 TA 548
>03_01_0185 - 1485023-1485733
Length = 236
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 202
S R S ++ P TT ++ +TAT + TT V T +P + A+
Sbjct: 35 SVVSRLSAAGNISPATTTPPTMTSSATATSAKTTRVTVPTPAPNTVHDAD 84
>06_01_0363 -
2588356-2588532,2588612-2588737,2588811-2588888,
2589584-2589715,2590768-2590878,2590964-2591191
Length = 283
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 651 QEEIP*CQCYICSILEKVRREVEYNVGKRKTAVP 752
+E+IP +C +C E++ RE+ V K++ A+P
Sbjct: 42 KEDIPYIRCQVC---ERIAREISAQVAKKQQALP 72
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 559 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 738
+ R R R +PR +AY FF + E K +P +S+ + WN ++ +
Sbjct: 215 RRRGRRQRDPAQPRPNRSAYNFFFKEKHPELKATHPHRE---REYSRMIGDAWNRLAADD 271
Query: 739 KQRFLR 756
K + R
Sbjct: 272 KMVYYR 277
>01_06_0626 + 30701538-30701939
Length = 133
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 29 KSRKRSKQSTSERYSTESSVDPTTTAAGAKSN--YSTATKSITTAVAATTESPASFA 193
K K + TS + + + P+ TA G ++ ++TAT S+ + T+ SP++ A
Sbjct: 52 KHEKPTTTCTSTNPMSTTVMPPSLTATGTDTSDHHATATASVFNGLGRTSSSPSNVA 108
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 415 TAATTNSTRTHSSCSATTDTGSIT 486
T AT RTH S SA+ TG++T
Sbjct: 44 TTATWRRARTHPSASASASTGTLT 67
>07_03_0334 +
16896979-16897212,16897521-16897564,16897803-16897875,
16898916-16899017
Length = 150
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 509 SVEWQIASVMLPVSVVAEQLECVLVEFV 426
S+ WQ+ + LPV +AEQ+ + V F+
Sbjct: 119 SMNWQLCLLALPVPFLAEQMAVLYVTFL 146
>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
Length = 708
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 5 ILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTAT-KSITTAVAATT 172
+L+V + SR+R+ + + + P +TA+G +++T K I A AA T
Sbjct: 280 VLLVVCTAASRRRAANGEVGKTAAARGLTPPSTASGELGEVTSSTSKEIALAAAAAT 336
>03_02_0010 +
4903473-4903525,4904117-4904175,4904285-4904355,
4904469-4904585,4907001-4907024,4907055-4907117,
4907303-4907407,4907552-4907602,4907702-4908535
Length = 458
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 640 REEHKKKYPDVSVI 681
REEH KKYPD VI
Sbjct: 66 REEHLKKYPDAKVI 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,494
Number of Sequences: 37544
Number of extensions: 184717
Number of successful extensions: 807
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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