Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1607
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 37 0.016
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 37 0.021
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 35 0.083
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.083
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 33 0.34
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92) 32 0.59
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 31 1.0
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 31 1.4
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 30 1.8
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_19704| Best HMM Match : FAD_binding_2 (HMM E-Value=0.48) 29 4.1
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1) 29 5.5
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 29 5.5
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 5.5
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 7.2
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_53176| Best HMM Match : Homeobox (HMM E-Value=0) 28 7.2
SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024) 28 7.2
SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 7.2
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033) 28 9.5
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6) 28 9.5
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFLR 756
NKP+G +AY FF+Q RE+ +++ S+ A FSK AE+W MSE+EK+ F++
Sbjct: 10 NKPKGAKSAYNFFLQDQREKLQREEGKFSL--ADFSKVSAEKWKNMSEEEKETFVQ 63
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +1
Query: 559 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 738
K R +++ NKP+ ++AY F+ R++ KK P+ S A SK E W+ M++ +
Sbjct: 90 KKRKKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNAS--GGALSKVLGEMWSKMTDDD 147
Query: 739 KQRF 750
K ++
Sbjct: 148 KTQY 151
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +1
Query: 559 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 738
K R R N P+ +T Y F+ RE+ + ++P++ F +K W+ MS+ +
Sbjct: 132 KRRRKTLRDTNAPKAPLTGYVQFLNEQREKVRSEHPELP--FPEVTKILGAEWSKMSQDD 189
Query: 739 KQRFL 753
KQR+L
Sbjct: 190 KQRYL 194
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQ---TCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFL 753
NKP+ +T Y +V+ + RE K ++P ++ F +K + WN++ +EKQ+FL
Sbjct: 192 NKPKAPVTGYVHYVRFLNSRRESVKHQHPHLT--FPEITKMLGQEWNSLLPEEKQKFL 247
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 741
N P+ M+AY ++ R+E K K P +SV SK E W +++K K
Sbjct: 540 NAPKRAMSAYMLWLNDTRQEIKDKNPGISV--TEVSKVAGEMWKNLTDKSK 588
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 36.7 bits (81), Expect = 0.021
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 59 SERYSTESSVDPTTTAAGAKSNYSTA----TKSITTAVAATTESPASFATAEPI 208
SE +TESS P T + KS+ +TA T +TT+ A T +PA+ TA I
Sbjct: 565 SEAATTESSTVPQTVVSETKSSTTTATITTTSEVTTSAAVLTVAPAATTTASAI 618
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 34.7 bits (76), Expect = 0.083
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 750
N+P+ +T+Y + Q R + KKYP++ + K +++W MSE+ K+ +
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLK--STELAAKLSKKWRKMSEERKKAY 201
>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 34.7 bits (76), Expect = 0.083
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +2
Query: 5 ILVVAESVKSRKRSKQSTSERYSTESSVDPT-TTAAGAKSNYSTATKSITTAVA---ATT 172
++ + +V K +T+E+ +T ++ + T TT A + +T TK+ TT+V+ ATT
Sbjct: 210 VVASSSAVIMTNAPKITTTEQLATTTAAETTPTTTTSASTTTATTTKATTTSVSTTTATT 269
Query: 173 ESPASFATAE 202
+ S TAE
Sbjct: 270 KEEESTTTAE 279
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 32.7 bits (71), Expect = 0.34
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 23 SVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 202
S + K + S++ +++ +TT A + ST + +TAV ATT SPA+ TA
Sbjct: 463 STSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTSTTKATTSTAVEATT-SPAATETAP 521
Query: 203 P 205
P
Sbjct: 522 P 522
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 44 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 178
S +S+++ YS + TTT A + + T SITTA A TT S
Sbjct: 478 SCKSSNDYYSVSNKATTTTTKLTALTTITHMTVSITTARATTTSS 522
>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
Length = 425
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 199
+ +E T ++ + TTT A A +TA ++ TTA ATT + + TA
Sbjct: 335 TAAEVTMTTTAAEVTTTTAAAAEATTTAAEATTTAAEATTTAAEATTTA 383
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 199
+T + V TTTAA + + A ++ TTA ATT + + TA
Sbjct: 334 TTAAEVTMTTTAAEVTTTTAAAAEATTTAAEATTTAAEATTTA 376
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 199
+ +E +T ++ + TTT A+ +T +TT AA E+ + A A
Sbjct: 317 TAAEVTTTTTATEVTTTTTAAEVTMTTTAAEVTTTTAAAAEATTTAAEA 365
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 199
+T ++ + TTTAA A + TA ++ TTA ATT + + TA
Sbjct: 358 ATTTAAEATTTAAEATT---TAAEATTTAAEATTTAAEATTTA 397
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 44 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEPI 208
++ +T+ +T ++ + TTTAA A + TA ++ TTA ATT + + + + I
Sbjct: 356 AEATTTAAEATTTAAEATTTAAEATT---TAAEATTTAAEATTTAAEATTSYQSI 407
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 53 STSERYST---ESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
ST E ST S+V PT+T + T+T TT +A TTESP S
Sbjct: 165 STVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTTMMAPTTESPTS 212
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +2
Query: 53 STSERYSTESS--VDPTTTAAG-AKSNYSTATKSITTAVAATTESPASFATA 199
+T+E+ +T ++ V TTTAA S S TK+ T A A TT A+ TA
Sbjct: 1147 TTAEKATTTTAAMVKATTTAAAVTASTASVVTKTATVAAATTTAEKATTLTA 1198
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 74 TESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 205
T ++ P TT A + TK TT + ATT++P + P
Sbjct: 6106 TSTTEPPVTTPTTAPTTTPPTTKQTTTQLPATTKAPTATKPTTP 6149
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 559 KARMPRSRPYNKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKE 738
+ R + N P+ +T Y F+ RE+ + + PD+ F ++ W+ + +
Sbjct: 165 RKRKKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLP--FHEVTRILGNMWSQLPTPQ 222
Query: 739 KQRFL 753
KQ FL
Sbjct: 223 KQLFL 227
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 202
+ E+++ P TTAA + T T TTA TT +P + A AE
Sbjct: 1250 AAETTMAPETTAAETTAATVTTTTLETTAALETTMAPETTAAAE 1293
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFATAE 202
S E++V P TTAA + T + TTA A TTE+ A AT +
Sbjct: 2057 SAETTVAPETTAAPDTTLVPDTTVAAETTAAAETTETTAVPATTD 2101
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 20 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
E+ K R + ++T+ + +T + P S+ + T++ TTA ATT++P +
Sbjct: 1808 ETTKPRTTTPKTTTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAPGA 1863
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFAT 196
+T+ +T ++ TTT A + +TAT + TT TT + + T
Sbjct: 5 TTTTTTTTTTTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTT 52
>SB_19704| Best HMM Match : FAD_binding_2 (HMM E-Value=0.48)
Length = 190
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -1
Query: 710 SAHFFENAANITLTSGY---FFLCSSRHVCTKNA*AVMRPRGL 591
S H F + T GY +F C+S H CT + A++ GL
Sbjct: 134 SLHRFRAKNTVLATGGYGRAYFSCTSAHTCTGDGTAMVTRAGL 176
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAAT-TESPASFATA 199
+T+ + ++V T TAA + + TAT ++T V AT T + A+ ATA
Sbjct: 711 TTTATATATATVTATVTAAASATAAVTATVTVTVTVTATVTVTAATAATA 760
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 80 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 199
++V TTTA + +TAT + TTA A T + + ATA
Sbjct: 320 ATVTTTTTATATATTTATATAT-TTATATATATATATATA 358
>SB_25081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 50 QSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
++T+ +T ++ TTTAA S + ++ TTA A TT + A+
Sbjct: 335 EATTTATATTTTAAITTTAATTTSEAAATAEATTTATATTTVTAAT 380
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNYSTATKSITTA----VAATTESPASFATAE 202
+T ++ TT AA +TAT + TTA AATT S A+ ATAE
Sbjct: 319 ATATTTATTTEAAATAEATTTATATTTTAAITTTAATTTSEAA-ATAE 365
>SB_40497| Best HMM Match : NDT80_PhoG (HMM E-Value=5.1)
Length = 360
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 80 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 205
+++ P+TT + STA TTA ATT++ A + T +P
Sbjct: 288 TTIKPSTTEESTTNEASTAEFESTTAAQATTKTEA-YTTKKP 328
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 80 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
SSV PT+ A S+ +T T A TTE+PA+
Sbjct: 841 SSVKPTSNPATVLSDGTTENPETTEASKTTTEAPAT 876
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFATAE 202
S E++V P TTAA + T + TTA A TTE+ A AT +
Sbjct: 244 SAETTVAPETTAAPDTTLVPDTTVAAETTAAAETTETTAVPATTD 288
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 32 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 205
S++ S Q TS T +S TTT+ +++ S + + + T+ P+S + +P
Sbjct: 680 SKQTSTQQTSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTSPSQQTTSPPPSSPSIGQP 737
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 20 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
E+ R + ++T+ + +T + P S+ + T++ TTA ATT++P +
Sbjct: 207 ETTTPRTTTPETTTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAPGA 262
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 11 VVAESVKSRKRSKQSTSERYSTESSV--DPTTTAAGAKSNYSTATKSITTAVAATTESPA 184
V+ S++S + STS S ESS+ + TT+ S++ S TT+V ++
Sbjct: 936 VLTSSMESSSMATTSTSSTPSFESSMTTNSTTSTPAEAVPISSSVSSTTTSVLTSSMESF 995
Query: 185 SFAT 196
S AT
Sbjct: 996 SMAT 999
>SB_53176| Best HMM Match : Homeobox (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 74 TESSVDPTTTAAGAKSNYSTATKSITTA 157
T S DP T AAGA S+ +T T+ TA
Sbjct: 43 TSKSGDPATLAAGAGSSEATRTRRYRTA 70
>SB_35467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 541
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 193
++S + T S TT+ A A S+Y+ AT S ++ + +SFA
Sbjct: 72 TSSHAHVTSSYTHVTTSYAHATSSYAHATSSFAHVTSSYAHATSSFA 118
>SB_33205| Best HMM Match : Mucin (HMM E-Value=0.0024)
Length = 286
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAEP 205
+T+ T + PTT A + + AT A AA PA+ A A P
Sbjct: 129 ATTPTTPTTAPTTPTTPTTAATTPTTAATTPAAGAAAAAAPPPAAAAAAPP 179
>SB_17966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 412 NTAATTNSTRTHSSCSATTDTGSITE 489
NTA ++N+ R H++C T T S T+
Sbjct: 16 NTATSSNTKRQHATCRTNTATSSNTK 41
>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 689
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 32 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSIT-TAVAATTESPASFATAEPI 208
S S +++ ++ S+V TTT + +TAT + T TA A T + + AT I
Sbjct: 406 SNSNSNSNSNSNSNSNSTVTATTTTTVTVTTTATATATATATATATATVTTTATATVTVI 465
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 32 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATA 199
S S + + +T +V T TA + +TAT ++TT AT A+ ATA
Sbjct: 416 SNSNSNSTVTATTTTTVTVTTTATATATATATATATATVTTTATATVTVIAT-ATA 470
>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 178
+T+ +T ++ TTTA + T +ITTAVA T S
Sbjct: 55 TTTTTTTTTTTTTTTTTATATTKTITITTVTITTAVANKTVS 96
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATT 172
+++ Y+T +S PTT+ S ST + + TT+ +TT
Sbjct: 75 TSTTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTSTT 114
>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
Length = 382
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 53 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 178
+T+ +T ++ TTTA + T +ITTAVA T S
Sbjct: 177 TTTTTTTTTTTTTTTTTATATTKTITITTVTITTAVANKTVS 218
>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
Length = 127
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 71 STESSVDPTTTAAGAKSNYSTATKSITTAVAATTE 175
+T S++ TTT +T T TT A TTE
Sbjct: 56 TTTSTITTTTTTTTTTKTTTTTTTKTTTTTATTTE 90
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 80 SSVDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPI 208
+S TT+ G + T TTA TTE+P AS TAE I
Sbjct: 964 TSTPETTSTPGTLAASETTAAPETTAKPETTETPAASVVTAEVI 1007
>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1047
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +2
Query: 26 VKSRKRSKQSTSERYSTESSV----DPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 193
VK + +TS +++SSV +P T SN A SI + + E +A
Sbjct: 480 VKKKAEVVVATSSTGTSDSSVKVEAEPVMTYKEETSNTLAALMSIDVPLVSKAEPSTGYA 539
Query: 194 TAEPI 208
T EP+
Sbjct: 540 TPEPV 544
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,076
Number of Sequences: 59808
Number of extensions: 232179
Number of successful extensions: 1373
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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