Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1607
(767 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 8e-04
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 37 0.017
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 37 0.017
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 31 0.64
At3g06180.1 68416.m00710 expressed protein 31 0.85
At2g12875.1 68415.m01402 hypothetical protein 30 2.0
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 3.4
At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /... 29 3.4
At3g09000.1 68416.m01053 proline-rich family protein 29 4.5
At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containi... 29 4.5
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 28 6.0
At5g53950.1 68418.m06712 no apical meristem (NAM) family protein... 28 7.9
At3g13350.1 68416.m01680 high mobility group (HMG1/2) family pro... 28 7.9
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 28 7.9
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +1
Query: 595 PRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRF 750
P+ TA+ FF+ R++++++ PDV + K C E+W TM+ +EK ++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSM-REIGKTCGEKWKTMTYEEKVKY 113
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 741
NKP+ +A+ F++ R KK+ P+V + +A K ++W +MS+ EK
Sbjct: 51 NKPKRAPSAFFVFLEDFRVTFKKENPNVKAV-SAVGKAGGQKWKSMSQAEK 100
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 36.7 bits (81), Expect = 0.017
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEK 741
NKP+ +A+ F++ R KK+ P+V + +A K ++W +MS+ EK
Sbjct: 51 NKPKRAPSAFFVFLEDFRVTFKKENPNVKAV-SAVGKAGGQKWKSMSQAEK 100
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 589 NKPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFL 753
NKP+ +TA+ F+ R+ K ++ AA K E+W +++E+EK+ +L
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAA--KIGGEKWKSLTEEEKKVYL 165
>At3g06180.1 68416.m00710 expressed protein
Length = 241
Score = 31.1 bits (67), Expect = 0.85
Identities = 12/44 (27%), Positives = 31/44 (70%)
Frame = +2
Query: 56 TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
+ E +ST +S+ P+++A+ + SN+S+++ S ++++ SP++
Sbjct: 8 SDEEHSTTNSMPPSSSASRSASNHSSSSSSSSSSLHLCKHSPSA 51
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 20 ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
E + + K+ + + S + P G K ATK I ATTE P+S
Sbjct: 45 EEEEKEEEKKKGMTTKESPPMIIMPVKKKTGLKRKRGVATKLIDKGTKATTEEPSS 100
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +2
Query: 8 LVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
L + E K +SE TES+ + A + +S AA E+PAS
Sbjct: 1158 LALEEPTKPLAIEAPPSSEAPQTESAPETAAAAESPAPETAAVAESPAPGTAAVAEAPAS 1217
Query: 188 FATAEPI 208
A P+
Sbjct: 1218 ETAAAPV 1224
>At3g54050.1 68416.m05976 fructose-1,6-bisphosphatase, putative /
D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative
/ FBPase, putative strong similarity to
fructose-1,6-bisphosphatase [Brassica napus] GI:289367;
identical to SP|P25851 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Arabidopsis thaliana}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 417
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 689 AANITLTSGYFFLCSSRHVCTKNA*AVMRPRGL 591
A T TS + L SSRHV + + +++ PR L
Sbjct: 3 ATAATTTSSHLLLSSSRHVASSSQPSILSPRSL 35
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +2
Query: 17 AESVKSRKRSKQSTSERYSTE---SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 187
+ S SR S+ +T R ST S+ P TT A + + +++ TA ATT + A
Sbjct: 148 SSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAP 207
Query: 188 FAT 196
T
Sbjct: 208 RTT 210
>At1g17630.1 68414.m02181 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 731
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -3
Query: 756 SQEPLFFFFRHCIPPLCALFRECCKYNTDIRVFLLVFFSARLHKECISCHATAGLVV 586
+ + LF +F H + LC ++C + + + + +F S L IS +A GL++
Sbjct: 51 NDQSLFHYFDHLLG-LCLTAQQCRQVHAQVLLSDFIFRSGSLAANLISVYARLGLLL 106
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 29 KSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAV 160
+SR +++ S S ES PTTT + ++ S TKSI A+
Sbjct: 233 RSRVANRKPASALMSAESETVPTTTGHDSVTSDSELTKSIEYAL 276
>At5g53950.1 68418.m06712 no apical meristem (NAM) family protein
identical to no apical meristem protein CUC2
(GI:1944132) [Arabidopsis thaliana]; contains Pfam
PF02365: No apical meristem (NAM) domain;
Length = 375
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 14 VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAAT--TESPAS 187
V ++ + + S+ S +DPTTT S+ S ++S T V A+ TE +
Sbjct: 203 VPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSC 262
Query: 188 FAT 196
F+T
Sbjct: 263 FST 265
>At3g13350.1 68416.m01680 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 319
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 592 KPRGRMTAYAFFVQTCREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQ 744
KP+ + Y FF E++ + P+ + +KK W+ ++E EKQ
Sbjct: 237 KPKCHRSGYNFFFA---EQYARLKPEYHGQERSITKKIGHMWSNLTESEKQ 284
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 390 YSTKLLN--QYSSNNKLYKNTFKL-FSNNRYRQHY 485
Y TK N ++++NN Y FK F+NN+Y ++Y
Sbjct: 142 YGTKGYNNEEFNNNNNKYDANFKEEFNNNKYDENY 176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,065,870
Number of Sequences: 28952
Number of extensions: 148554
Number of successful extensions: 609
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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