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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1606X
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   159   2e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    79   2e-16
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    58   6e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    56   2e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    47   1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    42   3e-05
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   0.70 
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    27   1.2  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   2.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.2  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    26   2.2  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   3.8  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   5.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.6  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    24   8.7  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    24   8.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    24   8.7  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    24   8.7  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    24   8.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  159 bits (386), Expect = 2e-40
 Identities = 73/107 (68%), Positives = 81/107 (75%)
 Frame = +3

Query: 111 DEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAK 290
           +EE+AALV+ NGSGMC+ GFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+        ++K
Sbjct: 2   EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61

Query: 291 EVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
                   P  HGIV NWDDM KIWHHT YNELRV PEEHP LLTEA
Sbjct: 62  RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEA 108


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +3

Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS*PS 308
           + + NGSG  + GFAGDD P+ +FP+ VGR +H+ VM    Q+     +  +        
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71

Query: 309 NSPSRHGIVTNWDDMAKIWHHTVYN--ELRVVPEEHPVLLTE 428
             P   GI+ NW DM +IW + +Y+  +L  +PEEHP+LLTE
Sbjct: 72  QRPIERGIIQNWSDMEEIWSY-IYSDQQLNTLPEEHPLLLTE 112


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 58.0 bits (134), Expect = 6e-10
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = +3

Query: 117 EVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEV 296
           E A +V+ NG+G  + G+A D+ PR  FPSIVGRP  +        + +       A+ V
Sbjct: 2   ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61

Query: 297 S--*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
                   P  +GI+ ++++M ++W +T + +L++ P    +LLTE
Sbjct: 62  RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTE 107


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 34/105 (32%), Positives = 55/105 (52%)
 Frame = +3

Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKE 293
           +EV+A+V+  GS   + GF+G+D P+ V PS  G           G+R    E  +++  
Sbjct: 9   DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-------FSDGRRLFGEEYIYKSNP 61

Query: 294 VS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
                N+  R+G V NWD    +W + +  +L+  P EHP+L+TE
Sbjct: 62  GMEIKNA-IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE 105


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +3

Query: 315 PSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
           P RHG + NWD M + W  +++  LR  PE+H  LLTE
Sbjct: 93  PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTE 130



 Score = 34.3 bits (75), Expect = 0.008
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = +3

Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIV 212
           +++ NG+G  + G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 26/105 (24%), Positives = 51/105 (48%)
 Frame = +3

Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKE 293
           EE+ +LV+  GS   + G+AG+++P  + PS  G    +  + G  +     E +  A  
Sbjct: 8   EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV---RSDVTGRNKYVVD-ELQIHAPI 63

Query: 294 VS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
                 +   +GI+ +W+     W   +  +L+V P E+ +++TE
Sbjct: 64  PGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 284 SVPRLLRTSPLSHTDHHALMAGPSHDRGEH 195
           +VP L    P  HT H +   G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 262 VRRRRGTEQKRYPDPQ-IVHRDTESSLTGMTWRRF 363
           VR+       R P PQ I+H +T S+LTG+T   F
Sbjct: 164 VRKAGAVFYCRTPQPQAIMHLETSSNLTGVTVNPF 198


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = -2

Query: 349 SSQLVTIPCRDGLFE-----GQDTSFALCLVSYVRVLCPIPTITP*WRGLPTIEGNTARG 185
           S+   T+P ++   E       +TSFAL   S    L   PT +      P +E +    
Sbjct: 57  STNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSL 116

Query: 184 ASSPAKPSWHIP 149
           +S+PA P  + P
Sbjct: 117 SSTPAAPQLNSP 128


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 244 PTITP*WRGLPTIEGNTARGASSPAKPSWHIPEPLTTTNAATSSS 110
           PT+ P     P    N     S P   +     PL TTN  TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455



 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 178 SPAKPSWHIPEPLTTTNAATSSS 110
           +P  P      PLTTTN  TS+S
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTS 432


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 328 PCRDGLFEGQDTSFALCLVS 269
           PC D LF G D +  +CL+S
Sbjct: 130 PCLDDLFGGYDWAPGICLIS 149


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 355 AMSSQLVTIPCRDGLFEGQDTSFALCLVSYVRVLCPIPTITP*WRGLPTIEGNTARGASS 176
           A+ S ++ +  RD L E    S  L     +R+    P I    RGL  ++G      + 
Sbjct: 320 AIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVD-VRGLGLLQGIEIASCTD 378

Query: 175 PAKPS 161
           P+KPS
Sbjct: 379 PSKPS 383


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 160  WHIPEPLTTTNAATSSSHILN*FLIK*FYY 71
            W+IP P  +++   ++S +   FLI  F Y
Sbjct: 1165 WYIPPPANSSDTNITNSDVTALFLISCFQY 1194


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 GDDAPRAVFPSIVGRPRHQGVMVGM 248
           G+  PRA F  ++  P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 340 LVTIPCRDGLFEGQDTSFALCL 275
           LV I C DG+F G  +SF+  L
Sbjct: 338 LVDITCWDGIFVGLHSSFSWIL 359


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 398 DDTQLIVDGMMPNLRHVIPVSDDSVSRW 315
           D    +    + +  H+ PV+ D VSRW
Sbjct: 147 DPISAVASAALVSAYHLYPVAKDIVSRW 174


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 343 QLVTIPCRDGLFEGQDTSFALCLVSYVR 260
           QL    C DG FE   +SF L  V Y R
Sbjct: 256 QLQNTYCVDGTFELLFSSFGLVFVVYTR 283


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 327 RVAMDYLRVRIPLLLCASSPTYESSVPYRPSRPDGG 220
           R  + Y+R+ + +L  A+     + VP  PS+P  G
Sbjct: 602 RADVRYVRLLLLILFDAAKELQNALVPLSPSQPHSG 637


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 288 LLCASSPTYESSVPYRPSRPDGGAFPRSRGTR 193
           LLCAS    +SS  Y+P     G+F  S  T+
Sbjct: 140 LLCASLNYIDSSNTYQPQLSYPGSFSFSNNTQ 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,590
Number of Sequences: 5004
Number of extensions: 39314
Number of successful extensions: 145
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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