Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1606X
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 159 2e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 79 2e-16
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 6e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 2e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 3e-05
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 0.70
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.2
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 2.2
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 3.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 5.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 24 8.7
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 24 8.7
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 24 8.7
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 24 8.7
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 24 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 159 bits (386), Expect = 2e-40
Identities = 73/107 (68%), Positives = 81/107 (75%)
Frame = +3
Query: 111 DEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAK 290
+EE+AALV+ NGSGMC+ GFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+ ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 291 EVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
P HGIV NWDDM KIWHHT YNELRV PEEHP LLTEA
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEA 108
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.4 bits (187), Expect = 2e-16
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +3
Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS*PS 308
+ + NGSG + GFAGDD P+ +FP+ VGR +H+ VM Q+ + +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 309 NSPSRHGIVTNWDDMAKIWHHTVYN--ELRVVPEEHPVLLTE 428
P GI+ NW DM +IW + +Y+ +L +PEEHP+LLTE
Sbjct: 72 QRPIERGIIQNWSDMEEIWSY-IYSDQQLNTLPEEHPLLLTE 112
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.0 bits (134), Expect = 6e-10
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +3
Query: 117 EVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEV 296
E A +V+ NG+G + G+A D+ PR FPSIVGRP + + + A+ V
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 297 S--*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
P +GI+ ++++M ++W +T + +L++ P +LLTE
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTE 107
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 56.4 bits (130), Expect = 2e-09
Identities = 34/105 (32%), Positives = 55/105 (52%)
Frame = +3
Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKE 293
+EV+A+V+ GS + GF+G+D P+ V PS G G+R E +++
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-------FSDGRRLFGEEYIYKSNP 61
Query: 294 VS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
N+ R+G V NWD +W + + +L+ P EHP+L+TE
Sbjct: 62 GMEIKNA-IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE 105
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 47.2 bits (107), Expect = 1e-06
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 315 PSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
P RHG + NWD M + W +++ LR PE+H LLTE
Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTE 130
Score = 34.3 bits (75), Expect = 0.008
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +3
Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIV 212
+++ NG+G + G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 42.3 bits (95), Expect = 3e-05
Identities = 26/105 (24%), Positives = 51/105 (48%)
Frame = +3
Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKE 293
EE+ +LV+ GS + G+AG+++P + PS G + + G + E + A
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV---RSDVTGRNKYVVD-ELQIHAPI 63
Query: 294 VS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
+ +GI+ +W+ W + +L+V P E+ +++TE
Sbjct: 64 PGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 27.9 bits (59), Expect = 0.70
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 284 SVPRLLRTSPLSHTDHHALMAGPSHDRGEH 195
+VP L P HT H + G +H++G H
Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 262 VRRRRGTEQKRYPDPQ-IVHRDTESSLTGMTWRRF 363
VR+ R P PQ I+H +T S+LTG+T F
Sbjct: 164 VRKAGAVFYCRTPQPQAIMHLETSSNLTGVTVNPF 198
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 2.2
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = -2
Query: 349 SSQLVTIPCRDGLFE-----GQDTSFALCLVSYVRVLCPIPTITP*WRGLPTIEGNTARG 185
S+ T+P ++ E +TSFAL S L PT + P +E +
Sbjct: 57 STNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSL 116
Query: 184 ASSPAKPSWHIP 149
+S+PA P + P
Sbjct: 117 SSTPAAPQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -2
Query: 244 PTITP*WRGLPTIEGNTARGASSPAKPSWHIPEPLTTTNAATSSS 110
PT+ P P N S P + PL TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 178 SPAKPSWHIPEPLTTTNAATSSS 110
+P P PLTTTN TS+S
Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTS 432
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 328 PCRDGLFEGQDTSFALCLVS 269
PC D LF G D + +CL+S
Sbjct: 130 PCLDDLFGGYDWAPGICLIS 149
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 3.8
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -2
Query: 355 AMSSQLVTIPCRDGLFEGQDTSFALCLVSYVRVLCPIPTITP*WRGLPTIEGNTARGASS 176
A+ S ++ + RD L E S L +R+ P I RGL ++G +
Sbjct: 320 AIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVD-VRGLGLLQGIEIASCTD 378
Query: 175 PAKPS 161
P+KPS
Sbjct: 379 PSKPS 383
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 160 WHIPEPLTTTNAATSSSHILN*FLIK*FYY 71
W+IP P +++ ++S + FLI F Y
Sbjct: 1165 WYIPPPANSSDTNITNSDVTALFLISCFQY 1194
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 174 GDDAPRAVFPSIVGRPRHQGVMVGM 248
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 340 LVTIPCRDGLFEGQDTSFALCL 275
LV I C DG+F G +SF+ L
Sbjct: 338 LVDITCWDGIFVGLHSSFSWIL 359
>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 8.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 398 DDTQLIVDGMMPNLRHVIPVSDDSVSRW 315
D + + + H+ PV+ D VSRW
Sbjct: 147 DPISAVASAALVSAYHLYPVAKDIVSRW 174
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 343 QLVTIPCRDGLFEGQDTSFALCLVSYVR 260
QL C DG FE +SF L V Y R
Sbjct: 256 QLQNTYCVDGTFELLFSSFGLVFVVYTR 283
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 327 RVAMDYLRVRIPLLLCASSPTYESSVPYRPSRPDGG 220
R + Y+R+ + +L A+ + VP PS+P G
Sbjct: 602 RADVRYVRLLLLILFDAAKELQNALVPLSPSQPHSG 637
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 288 LLCASSPTYESSVPYRPSRPDGGAFPRSRGTR 193
LLCAS +SS Y+P G+F S T+
Sbjct: 140 LLCASLNYIDSSNTYQPQLSYPGSFSFSNNTQ 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,873,590
Number of Sequences: 5004
Number of extensions: 39314
Number of successful extensions: 145
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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