BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1606X (431 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 159 2e-40 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 79 2e-16 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 6e-10 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 2e-09 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 1e-06 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 3e-05 SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 28 0.70 SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.2 SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 2.2 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.2 SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 2.2 SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 3.8 SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 5.0 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.6 SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 24 8.7 SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 24 8.7 SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 24 8.7 SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 24 8.7 SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 24 8.7 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 159 bits (386), Expect = 2e-40 Identities = 73/107 (68%), Positives = 81/107 (75%) Frame = +3 Query: 111 DEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAK 290 +EE+AALV+ NGSGMC+ GFAGDDAPRAVFPSIVGRPRH G+MVGMGQ+ ++K Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 291 EVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431 P HGIV NWDDM KIWHHT YNELRV PEEHP LLTEA Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEA 108 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 79.4 bits (187), Expect = 2e-16 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Frame = +3 Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS*PS 308 + + NGSG + GFAGDD P+ +FP+ VGR +H+ VM Q+ + + Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71 Query: 309 NSPSRHGIVTNWDDMAKIWHHTVYN--ELRVVPEEHPVLLTE 428 P GI+ NW DM +IW + +Y+ +L +PEEHP+LLTE Sbjct: 72 QRPIERGIIQNWSDMEEIWSY-IYSDQQLNTLPEEHPLLLTE 112 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 58.0 bits (134), Expect = 6e-10 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 2/106 (1%) Frame = +3 Query: 117 EVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEV 296 E A +V+ NG+G + G+A D+ PR FPSIVGRP + + + A+ V Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61 Query: 297 S--*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428 P +GI+ ++++M ++W +T + +L++ P +LLTE Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTE 107 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 56.4 bits (130), Expect = 2e-09 Identities = 34/105 (32%), Positives = 55/105 (52%) Frame = +3 Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKE 293 +EV+A+V+ GS + GF+G+D P+ V PS G G+R E +++ Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE-------FSDGRRLFGEEYIYKSNP 61 Query: 294 VS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428 N+ R+G V NWD +W + + +L+ P EHP+L+TE Sbjct: 62 GMEIKNA-IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE 105 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 47.2 bits (107), Expect = 1e-06 Identities = 18/38 (47%), Positives = 24/38 (63%) Frame = +3 Query: 315 PSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428 P RHG + NWD M + W +++ LR PE+H LLTE Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTE 130 Score = 34.3 bits (75), Expect = 0.008 Identities = 12/28 (42%), Positives = 22/28 (78%) Frame = +3 Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIV 212 +++ NG+G + G+AG+DAP VFP+++ Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 42.3 bits (95), Expect = 3e-05 Identities = 26/105 (24%), Positives = 51/105 (48%) Frame = +3 Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKE 293 EE+ +LV+ GS + G+AG+++P + PS G + + G + E + A Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGV---RSDVTGRNKYVVD-ELQIHAPI 63 Query: 294 VS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428 + +GI+ +W+ W + +L+V P E+ +++TE Sbjct: 64 PGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108 >SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 282 Score = 27.9 bits (59), Expect = 0.70 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = -1 Query: 284 SVPRLLRTSPLSHTDHHALMAGPSHDRGEH 195 +VP L P HT H + G +H++G H Sbjct: 148 TVPLLSEMDPAEHTRHDSKTLGLNHNQGAH 177 >SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual Length = 533 Score = 27.1 bits (57), Expect = 1.2 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Frame = +1 Query: 262 VRRRRGTEQKRYPDPQ-IVHRDTESSLTGMTWRRF 363 VR+ R P PQ I+H +T S+LTG+T F Sbjct: 164 VRKAGAVFYCRTPQPQAIMHLETSSNLTGVTVNPF 198 >SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 26.2 bits (55), Expect = 2.2 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Frame = -2 Query: 349 SSQLVTIPCRDGLFE-----GQDTSFALCLVSYVRVLCPIPTITP*WRGLPTIEGNTARG 185 S+ T+P ++ E +TSFAL S L PT + P +E + Sbjct: 57 STNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSL 116 Query: 184 ASSPAKPSWHIP 149 +S+PA P + P Sbjct: 117 SSTPAAPQLNSP 128 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 26.2 bits (55), Expect = 2.2 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = -2 Query: 244 PTITP*WRGLPTIEGNTARGASSPAKPSWHIPEPLTTTNAATSSS 110 PT+ P P N S P + PL TTN TS+S Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 Score = 24.6 bits (51), Expect = 6.6 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 178 SPAKPSWHIPEPLTTTNAATSSS 110 +P P PLTTTN TS+S Sbjct: 410 TPTVPPTSSSTPLTTTNCTTSTS 432 >SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 408 Score = 26.2 bits (55), Expect = 2.2 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 328 PCRDGLFEGQDTSFALCLVS 269 PC D LF G D + +CL+S Sbjct: 130 PCLDDLFGGYDWAPGICLIS 149 >SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 448 Score = 25.4 bits (53), Expect = 3.8 Identities = 19/65 (29%), Positives = 29/65 (44%) Frame = -2 Query: 355 AMSSQLVTIPCRDGLFEGQDTSFALCLVSYVRVLCPIPTITP*WRGLPTIEGNTARGASS 176 A+ S ++ + RD L E S L +R+ P I RGL ++G + Sbjct: 320 AIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVD-VRGLGLLQGIEIASCTD 378 Query: 175 PAKPS 161 P+KPS Sbjct: 379 PSKPS 383 >SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3|||Manual Length = 1315 Score = 25.0 bits (52), Expect = 5.0 Identities = 10/30 (33%), Positives = 17/30 (56%) Frame = -2 Query: 160 WHIPEPLTTTNAATSSSHILN*FLIK*FYY 71 W+IP P +++ ++S + FLI F Y Sbjct: 1165 WYIPPPANSSDTNITNSDVTALFLISCFQY 1194 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 24.6 bits (51), Expect = 6.6 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +3 Query: 174 GDDAPRAVFPSIVGRPRHQGVMVGM 248 G+ PRA F ++ P H G+++ M Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526 >SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 367 Score = 24.2 bits (50), Expect = 8.7 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 340 LVTIPCRDGLFEGQDTSFALCL 275 LV I C DG+F G +SF+ L Sbjct: 338 LVDITCWDGIFVGLHSSFSWIL 359 >SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 24.2 bits (50), Expect = 8.7 Identities = 9/28 (32%), Positives = 14/28 (50%) Frame = -1 Query: 398 DDTQLIVDGMMPNLRHVIPVSDDSVSRW 315 D + + + H+ PV+ D VSRW Sbjct: 147 DPISAVASAALVSAYHLYPVAKDIVSRW 174 >SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces pombe|chr 1|||Manual Length = 860 Score = 24.2 bits (50), Expect = 8.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -2 Query: 343 QLVTIPCRDGLFEGQDTSFALCLVSYVR 260 QL C DG FE +SF L V Y R Sbjct: 256 QLQNTYCVDGTFELLFSSFGLVFVVYTR 283 >SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 886 Score = 24.2 bits (50), Expect = 8.7 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = -3 Query: 327 RVAMDYLRVRIPLLLCASSPTYESSVPYRPSRPDGG 220 R + Y+R+ + +L A+ + VP PS+P G Sbjct: 602 RADVRYVRLLLLILFDAAKELQNALVPLSPSQPHSG 637 >SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual Length = 545 Score = 24.2 bits (50), Expect = 8.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 288 LLCASSPTYESSVPYRPSRPDGGAFPRSRGTR 193 LLCAS +SS Y+P G+F S T+ Sbjct: 140 LLCASLNYIDSSNTYQPQLSYPGSFSFSNNTQ 171 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,873,590 Number of Sequences: 5004 Number of extensions: 39314 Number of successful extensions: 145 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 154067960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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