Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1606X
(431 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 172 8e-44
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 172 8e-44
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 172 8e-44
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 172 8e-44
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 172 8e-44
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 172 8e-44
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 171 2e-43
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 169 6e-43
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 165 9e-42
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 139 9e-34
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 124 3e-29
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 124 3e-29
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 123 6e-29
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 120 6e-28
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 87 4e-18
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 82 1e-16
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 64 5e-11
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 49 1e-06
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 37 0.005
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 29 1.9
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 29 1.9
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 28 2.5
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein. 28 3.3
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn... 28 3.3
Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z70780-10|CAA94827.1| 330|Caenorhabditis elegans Hypothetical p... 27 7.7
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 27 7.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 172 bits (419), Expect = 8e-44
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 172 bits (419), Expect = 8e-44
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 172 bits (419), Expect = 8e-44
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 172 bits (419), Expect = 8e-44
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 172 bits (419), Expect = 8e-44
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 172 bits (419), Expect = 8e-44
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 171 bits (416), Expect = 2e-43
Identities = 80/109 (73%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD++VAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 169 bits (412), Expect = 6e-43
Identities = 78/109 (71%), Positives = 86/109 (78%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD++VAAL++ NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
+K P HGIVTNWDDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 109
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 165 bits (402), Expect = 9e-42
Identities = 77/107 (71%), Positives = 84/107 (78%)
Frame = +3
Query: 111 DEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAK 290
+EE+AALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ ++K
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 291 EVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
P HGIVTNWDDM KIWHHT YNELR+ PEEHPVLLTEA
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEA 108
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 139 bits (336), Expect = 9e-34
Identities = 65/89 (73%), Positives = 68/89 (76%)
Frame = +3
Query: 165 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS*PSNSPSRHGIVTNW 344
GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ ++K P HGIVTNW
Sbjct: 7 GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 66
Query: 345 DDMAKIWHHTVYNELRVVPEEHPVLLTEA 431
DDM KIWHHT YNELRV PEEHPVLLTEA
Sbjct: 67 DDMEKIWHHTFYNELRVAPEEHPVLLTEA 95
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 124 bits (299), Expect = 3e-29
Identities = 60/86 (69%), Positives = 65/86 (75%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKI 362
+K P HGIVTNWDDM KI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 124 bits (299), Expect = 3e-29
Identities = 60/86 (69%), Positives = 65/86 (75%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD+EVAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKI 362
+K P HGIVTNWDDM KI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 123 bits (296), Expect = 6e-29
Identities = 59/86 (68%), Positives = 65/86 (75%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD++VAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDMAKI 362
+K P HGIVTNWDDM KI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 120 bits (288), Expect = 6e-28
Identities = 57/83 (68%), Positives = 63/83 (75%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHR 284
MCD++VAALVV NGSGMC+ GFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ+ +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 285 AKEVS*PSNSPSRHGIVTNWDDM 353
+K P HGIVTNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 87.4 bits (207), Expect = 4e-18
Identities = 41/65 (63%), Positives = 44/65 (67%)
Frame = +3
Query: 237 MVGMGQRTRT*ETRHRAKEVS*PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPV 416
MVGMGQ+ ++K P HGIVTNWDDM KIWHHT YNELRV PEEHPV
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 60
Query: 417 LLTEA 431
LLTEA
Sbjct: 61 LLTEA 65
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 82.2 bits (194), Expect = 1e-16
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +3
Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS*PS 308
+V+ NGSG+ + GFAG+ P+ F + VGRP++ VM G + +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 309 NSPSRHGIVTNWDDMAKIWHHTV-YNELRVVPEEHPVLLTEA 431
P HGIV NW DM KIW + ++L++ PEEHPVLLT+A
Sbjct: 71 EYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDA 112
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 63.7 bits (148), Expect = 5e-11
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Frame = +3
Query: 129 LVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ--RTRT*ETRHRAKEVS 299
+VV NG+G + G+AG + P +FPS+VGRP + VG + E + +++
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 300 *PSNSPSRHGIVTNWDDMAKIWHHTVYNE-LRVVPEEHPVLLTE 428
N P +GIV NWDDMA +W HT E L + P+E +LLTE
Sbjct: 69 -DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTE 111
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 49.2 bits (112), Expect = 1e-06
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Frame = +3
Query: 105 MCDEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSI------VGRPRHQGVM----VGMGQ 254
M ++ A V+ NG+G + G+AG+ P+ + PS V Q + VG G
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 255 RTRT*ETRHRAKEVS*PSNS---PSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLT 425
A + + + P RHGIV +WD M + W ++ LR PE+H LLT
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLT 120
Query: 426 E 428
E
Sbjct: 121 E 121
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 37.1 bits (82), Expect = 0.005
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Frame = +3
Query: 114 EEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRP---------RHQGVMVGMGQRTRT 266
+EV+ LV GS + GFAG++ P+ PS + + + + G + +T
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYIAVQEALPDDTIEKQEAMEEGDNSKVQT 68
Query: 267 *ETRH---RAKEVS*P---SNSPS--RHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLL 422
++ ++ P +N S + G++ +W+ KI H+ N L P EHPVL
Sbjct: 69 KREKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLF 128
Query: 423 TEA 431
+E+
Sbjct: 129 SES 131
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/103 (24%), Positives = 42/103 (40%)
Frame = +3
Query: 120 VAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS 299
+ ++ NG + G ++PR V SIV + +H+ V + E + + S
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAH-----EQEECSDKFS 56
Query: 300 *PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
P G V NWD +IW T + + V + LT+
Sbjct: 57 LFYVRPIERGYVVNWDTQQQIWEKT-FGSMDVEASTSRIALTD 98
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/103 (24%), Positives = 42/103 (40%)
Frame = +3
Query: 120 VAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQRTRT*ETRHRAKEVS 299
+ ++ NG + G ++PR V SIV + +H+ V + E + + S
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAH-----EQEECSDKFS 56
Query: 300 *PSNSPSRHGIVTNWDDMAKIWHHTVYNELRVVPEEHPVLLTE 428
P G V NWD +IW T + + V + LT+
Sbjct: 57 LFYVRPIERGYVVNWDTQQQIWEKT-FGSMDVEASTSRIALTD 98
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -3
Query: 306 RVRIPLLLCASSPTYESSVPYRPSRPDGGAFPRSRGTRR-EEH--HHLRNRP 160
R+RIP P ++ + YRP P G +F R R EEH H N+P
Sbjct: 983 RIRIP------GPKFDLLIEYRPCVPMGQSFSFERVVERVEEHQRHEFTNQP 1028
>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
Length = 1007
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 428 LSEQDRV-FLGDDTQ-LIVDGMMPNLRHVIPVSDDSVSRWTI*GSGYLFCSVPR 273
L+E R+ + GD+ Q + D +RH+IP DD+ S T+ + L +P+
Sbjct: 133 LNETTRIEYSGDERQDFLFDETFAGVRHLIPDEDDNESNPTVTTTRLLCKHIPQ 186
>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
abnormal protein 2 protein.
Length = 1007
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 428 LSEQDRV-FLGDDTQ-LIVDGMMPNLRHVIPVSDDSVSRWTI*GSGYLFCSVPR 273
L+E R+ + GD+ Q + D +RH+IP DD+ S T+ + L +P+
Sbjct: 133 LNETTRIEYSGDERQDFLFDETFAGVRHLIPDEDDNESNPTVTTTRLLCKHIPQ 186
>Z46828-1|CAA86856.1| 542|Caenorhabditis elegans Hypothetical
protein R03D7.2 protein.
Length = 542
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 240 PSRPDGGAFPRSRGTRREEHHHLRN 166
PS GA PRSR R + HH R+
Sbjct: 8 PSSKIDGAAPRSRSPHRRQPHHSRS 32
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 209 RGKAPPSGRDGRYGTEDSYVGDEAQSKRG 295
RGKA +GRDGR G E + Q +RG
Sbjct: 216 RGKAGHTGRDGRPGLEGTPGTRGVQGERG 244
>Z70780-10|CAA94827.1| 330|Caenorhabditis elegans Hypothetical
protein F46B6.11 protein.
Length = 330
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 330 FRVAMDYLRVRIPLLLCASSPTYES 256
F V MD+L VRIPL +S Y+S
Sbjct: 80 FHVLMDFLIVRIPLTSLFTSYCYQS 104
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 225 GGAFPRSRGTRREEHHH 175
GG RG+RR EHHH
Sbjct: 119 GGGILDVRGSRRREHHH 135
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 250 PIPTITP*WRGLPTIEGNTARGASSPAKPSWHIPEPLTTTNAATSSS 110
P+PT T PT T G +P+ + +P P TT + T ++
Sbjct: 492 PVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTT 538
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,000
Number of Sequences: 27780
Number of extensions: 234078
Number of successful extensions: 796
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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