Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1606X
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   5.9  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 289 FALCLVSYVRVLC 251
           F LC+VSY+ V C
Sbjct: 9   FTLCIVSYMMVRC 21


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 202 GNTARGASSPAKPSWHIPEPLTTTNAATSSSHI 104
           GN +   ++ A P+    EP TTT+   S  HI
Sbjct: 374 GNYSLVPTTTASPT---TEPSTTTSTTISQKHI 403


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 111 DEEVAALVVVNGSGMCQDGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ 254
           D  V   VV  G+ +  DG A  +A  A+F +     +  G+ +G+G+
Sbjct: 381 DSRVTRFVVAVGATVNMDGTALYEAVAAIFIA-----QMNGISLGIGE 423


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 217 LPTIEGNTARGASSPAKPSWHIPE 146
           + T+    A+   +P + SWH PE
Sbjct: 137 ISTLYALGAKIIRTPTEASWHSPE 160


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 150 GMCQDGFAGD 179
           GMC++G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,779
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)