Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1605
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.2  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   9.7  

>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 649 LTDVFDGYSSFVSKLKIEKKKTKNSLN 729
           +   FDGY S ++ + I+K+  +NS+N
Sbjct: 397 IVKTFDGYRSEMNDVDIQKRDIQNSIN 423


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 538 ILTFPIPEPTTTHNKRLSLHLTSTVIY 458
           +L FPIP+P+T   +  SL+ +    Y
Sbjct: 5   VLAFPIPDPSTPPPEEASLYASKCDYY 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,089
Number of Sequences: 5004
Number of extensions: 50550
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)