Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1605
         (814 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M91556-1|AAA59899.1| 1682|Homo sapiens Na+ channel protein.            30   8.7  

>M91556-1|AAA59899.1| 1682|Homo sapiens Na+ channel protein.
          Length = 1682

 Score = 30.3 bits (65), Expect = 8.7
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +1

Query: 709  KTKNSLNPLILVKFVRVPRFLISGNDVKVVVASL 810
            KT+  L PLI +KF+R  R L     +KVVV +L
Sbjct: 1018 KTREELKPLISMKFLRPLRVLSQFERMKVVVRAL 1051


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,356,112
Number of Sequences: 237096
Number of extensions: 1527555
Number of successful extensions: 2188
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2188
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)