Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1605
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   4.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   4.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   4.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   4.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   4.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   4.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 676 SFVSKLKIEKKKTKNSLNP 732
           S + + + EKKKTK SL+P
Sbjct: 532 SSMKETEEEKKKTKQSLSP 550


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 591 NNVIYQHFNNFNT*VYAPY*HFRYQN 514
           NN  Y ++NN+N      Y   +Y N
Sbjct: 87  NNYKYSNYNNYNNNYNTNYKKLQYYN 112


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 159 FYGIWIIILSILCFFYILCV 100
           FY    II S L  FYI C+
Sbjct: 338 FYNTDFIIYSSLSSFYIPCI 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,544
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)