Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1605
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) ...    31   1.2  
At1g53200.2 68414.m06029 expressed protein                             28   6.4  
At1g53200.1 68414.m06030 expressed protein                             28   6.4  
At5g01940.1 68418.m00113 eukaryotic translation initiation facto...    28   8.5  

>At2g41220.1 68415.m05090 glutamate synthase, chloroplast (GLU2) /
            ferredoxin-dependent glutamate synthase (Fd-GOGAT 2)
            identical to SP|Q9T0P4 Ferredoxin-dependent glutamate
            synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT
            2) {Arabidopsis thaliana}
          Length = 1629

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 649  LTDVFDGYSSFVSKLK-IEKKKTKNS-LNPLILVKFVRVPRFLISGNDVKVVVA 804
            LTDV DGYSS +  LK +    T  S +  +   +F   P FL++ + +++ VA
Sbjct: 1017 LTDVVDGYSSTLPHLKGLRNGDTATSAIKQVASGRFGVTPTFLVNADQLEIKVA 1070


>At1g53200.2 68414.m06029 expressed protein
          Length = 474

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 551 KSMRHINISDTRTNNNTQQTLIATPY 474
           K + H++ISD+ T  +T+  +++TPY
Sbjct: 128 KKVSHLSISDSETRMDTKVKVMSTPY 153


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 551 KSMRHINISDTRTNNNTQQTLIATPY 474
           K + H++ISD+ T  +T+  +++TPY
Sbjct: 267 KKVSHLSISDSETRMDTKVKVMSTPY 292


>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 231

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 655 DVFDGYSSFVSKLKIEKKKTKNSLNPLI 738
           +V D  SS+VSK    KKK K    PLI
Sbjct: 15  EVIDNDSSWVSKFDPSKKKKKKKQKPLI 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,483
Number of Sequences: 28952
Number of extensions: 236513
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)