Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1603
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    57   2e-09
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   4.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   6.5  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +1

Query: 1   DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREKAGVRPPILRIRGLMCGGLQLDEGS- 177
           DM +++G+SL V PFA L ++VP+ C R+LINRE AG                  D G  
Sbjct: 204 DMALVIGTSLLVHPFADLPEIVPNKCQRVLINREPAG------------------DFGER 245

Query: 178 YRDVARLGDCDEGCQDLADRLGWGDDFE 261
            +D+  LGDCD   + L   LGW D+ E
Sbjct: 246 KKDIMILGDCDSQVRALCKLLGWSDELE 273


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 292 SKRSCSRATNARSHPPIPVCLPSPGSLHHNLLASPHLY---RNLRLTVN 155
           SK +  R  N    PP+PV   S  +L H  L S H +    N+ L+ N
Sbjct: 218 SKLASLRNLNINDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLSTN 266


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +3

Query: 516 KHLLVLFNNNLKRYLVRNTQFNIRSIFMRLIQIKF 620
           K+ L   +NN KR+++R+  F+ ++ F R+I I++
Sbjct: 835 KYSLAKLSNNFKRFVMRDDPFS-QAYFKRVIGIRW 868


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 522 LLVLFNNNLKRYLVRNTQFNIRSIFMRLIQI 614
           +LVL +  +KR L+RN +   R +F  L++I
Sbjct: 651 VLVLESPIIKRSLIRNNRLKGRDLFSELVKI 681


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 429 LNEAKKSHDVIQIKILEN**KFTDM*MNYKHLLVLFNNNLK 551
           L E KK+ D I  KIL N  K     MN+  LL   N+ L+
Sbjct: 468 LEERKKAFDEIVEKILTNYGKHNAKNMNFTQLLHELNSTLQ 508


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = -3

Query: 260 SKSSPHPSLSAKSWQPSSQSPSLATSL*EPSSNCKPPHINPLILNIGGLTPAFSRFIRSR 81
           S ++   SLS+ S  PSS S  L++S    ++       +PL  +    +PA S FI S 
Sbjct: 27  SSAAASTSLSSSSVIPSSSSSMLSSS--SATAISSSSSSSPL-SSSSFTSPASSSFITSL 83

Query: 80  GHESGTISISDANGCTSSEDPIIMS 6
              S   S S +   TSS    + S
Sbjct: 84  VSSSSQQSSSSSASLTSSSSATLTS 108


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = -1

Query: 346 ASEGISTGAWGDAVNSSWSKRSCSRATN--ARSHPPIPVCLPSPGSLHHNLLASPHLYRN 173
           AS  ++      A N+S S  S S  +   A +  P+ V LP+    +H L  +P++  +
Sbjct: 335 ASNTLNHANGNQAENASESSTSQSNDSQGPANTSYPVSVPLPNDAENNHTLSRNPYI-PS 393

Query: 172 LRLTVNLHTLILLFSI*VVSRRPSHGLSEVEDTN 71
           L    N+   + + +    +   +H + +  D+N
Sbjct: 394 LNFKDNMSAELSVVATLASNSAQAHPMGQQSDSN 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,871
Number of Sequences: 5004
Number of extensions: 60660
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)