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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1603
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)               58   6e-09
SB_52409| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_55815| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_39653| Best HMM Match : TP2 (HMM E-Value=1.2)                       29   3.0  
SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)                  29   5.3  
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
          Length = 684

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 34/66 (51%), Positives = 44/66 (66%)
 Frame = +1

Query: 1   DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREKAGVRPPILRIRGLMCGGLQLDEGSY 180
           D++IIMG+SL VQPFASLID V  + PRLLIN+EK G +  ++ I     G   LD+ S 
Sbjct: 596 DLIIIMGTSLAVQPFASLIDRVLATTPRLLINKEKCGRQEELVTI--FNEGHAHLDKESR 653

Query: 181 RDVARL 198
           +D A L
Sbjct: 654 QDKAGL 659


>SB_52409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 26/37 (70%), Positives = 29/37 (78%)
 Frame = +1

Query: 1   DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREKAG 111
           D+LI+MG+SL VQPFASLI  V    PRLLINREK G
Sbjct: 385 DLLIVMGTSLIVQPFASLIARVSVDTPRLLINREKCG 421


>SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = +1

Query: 1   DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREKAG 111
           D+L++MG+SLEV+PFA +++ V  S PR+LINRE  G
Sbjct: 271 DLLLVMGTSLEVEPFAGIVNEVSRSTPRVLINRESVG 307


>SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINRE 102
           D+LI++GSSL+V+P A +   +    P++LINRE
Sbjct: 224 DLLIVIGSSLKVRPVALIPSHISPEVPQILINRE 257


>SB_55815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -2

Query: 375 LIPRHWVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQ 226
           ++ +HW+  LL  ++VP   E +++V      +  + +LEVI P   VCQ
Sbjct: 93  MVTKHWLDALLSIIAVPSKDENEAVVYSMRTRLLTINLLEVILP---VCQ 139


>SB_39653| Best HMM Match : TP2 (HMM E-Value=1.2)
          Length = 243

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = -3

Query: 254 SSPHPSLSAKSWQPS-----SQSPSLATSL*EPSSNCKPPHINPLILNI---GGLTPAFS 99
           +SP+ +L++   QP+     S + SL  S+   S++     +N   +N     GL P+ S
Sbjct: 116 ASPNSTLNSTEVQPTPTTTASHTASLEASI-NQSASISAQGVNGASINATATSGLVPSSS 174

Query: 98  RFIRSRGHESGTISISDANGCTSSED 21
              + +GH SGT + +      SSE+
Sbjct: 175 VSGQGQGHGSGTTTSAPTTSALSSEE 200


>SB_48173| Best HMM Match : WD40 (HMM E-Value=7.3e-18)
          Length = 659

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 233 SAKSWQPSSQSPSLATSL*EPSSNCKPPHINPLILNIGGLTPAFS 99
           + + W P+ +SP L T + +  S+C P  I+ L ++   +  ++S
Sbjct: 474 TCRLWNPTLKSPLLNTFILDKESSCTPTSIDFLRMDTSQMVASYS 518


>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2324

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
 Frame = -3

Query: 254  SSPHPSLSAKSWQP-SSQSPSLATSL*EPSSNCKPPHINPLILNIGG--LTPA------F 102
            S+P   +SA SW P  ++ P  +T+  +  +    P         GG    PA      F
Sbjct: 1076 SAPQAPMSAPSWMPVFTEGPGCSTAPTQTQATAANPDTGMPSPRFGGHPEEPAPHPRNVF 1135

Query: 101  SRFIRSRGHESGTISISDANGCTSSEDPIIMS 6
            S F  S G+ + T   SD      S +P + S
Sbjct: 1136 SGFPSSSGYGTSTAKTSDTTWTARSYNPSVYS 1167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,763,766
Number of Sequences: 59808
Number of extensions: 434594
Number of successful extensions: 1148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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