Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1603
(745 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-2781|AAG22161.1| 355|Drosophila melanogaster CG5085-PA... 72 1e-12
AY071228-1|AAL48850.1| 326|Drosophila melanogaster RE26822p pro... 49 6e-06
BT004901-1|AAO47879.1| 483|Drosophila melanogaster LD07439p pro... 42 9e-04
AF068758-1|AAC79684.1| 823|Drosophila melanogaster SIR2 protein. 42 9e-04
AE014134-2285|AAF53248.1| 823|Drosophila melanogaster CG5216-PA... 42 9e-04
BT029138-1|ABJ17071.1| 371|Drosophila melanogaster RE06164p pro... 30 2.9
AY061290-1|AAL28838.1| 384|Drosophila melanogaster LD20458p pro... 30 2.9
AJ272159-1|CAB77445.1| 568|Drosophila melanogaster nicotinic ac... 30 2.9
AE014296-3767|AAF45409.2| 261|Drosophila melanogaster CG12414-P... 30 2.9
BT028847-1|ABI34228.1| 353|Drosophila melanogaster RT01114p pro... 29 6.7
AE014297-509|AAF54087.1| 353|Drosophila melanogaster CG1046-PA ... 29 6.7
AE001572-10|AAD19800.1| 353|Drosophila melanogaster DNA-binding... 29 6.7
>AE014297-2781|AAG22161.1| 355|Drosophila melanogaster CG5085-PA
protein.
Length = 355
Score = 71.7 bits (168), Expect = 1e-12
Identities = 41/87 (47%), Positives = 50/87 (57%)
Frame = +1
Query: 1 DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREKAGVRPPILRIRGLMCGGLQLDEGSY 180
D+LIIMG+SLEVQPFASL+ C RLLINR+ G +L + L +
Sbjct: 224 DLLIIMGTSLEVQPFASLVWRPGPRCIRLLINRDAVGQASCVLFMDPNTRSLLFDKPNNT 283
Query: 181 RDVARLGDCDEGCQDLADRLGWGDDFE 261
RDVA LGDCD G LA LGW + +
Sbjct: 284 RDVAFLGDCDAGVMALAKALGWDQELQ 310
>AY071228-1|AAL48850.1| 326|Drosophila melanogaster RE26822p
protein.
Length = 326
Score = 49.2 bits (112), Expect = 6e-06
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +1
Query: 1 DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREKAG 111
D+LIIMG+SLEVQPFASL+ C RLLINR+ G
Sbjct: 255 DLLIIMGTSLEVQPFASLVWRPGPRCIRLLINRDAVG 291
>BT004901-1|AAO47879.1| 483|Drosophila melanogaster LD07439p
protein.
Length = 483
Score = 41.9 bits (94), Expect = 9e-04
Identities = 17/35 (48%), Positives = 28/35 (80%)
Frame = +1
Query: 1 DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREK 105
D+LI++GSSL+V+P A + +P + P++LINRE+
Sbjct: 421 DLLIVIGSSLKVRPVAHIPSSIPATVPQILINREQ 455
>AF068758-1|AAC79684.1| 823|Drosophila melanogaster SIR2 protein.
Length = 823
Score = 41.9 bits (94), Expect = 9e-04
Identities = 17/35 (48%), Positives = 28/35 (80%)
Frame = +1
Query: 1 DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREK 105
D+LI++GSSL+V+P A + +P + P++LINRE+
Sbjct: 421 DLLIVIGSSLKVRPVAHIPSSIPATVPQILINREQ 455
>AE014134-2285|AAF53248.1| 823|Drosophila melanogaster CG5216-PA
protein.
Length = 823
Score = 41.9 bits (94), Expect = 9e-04
Identities = 17/35 (48%), Positives = 28/35 (80%)
Frame = +1
Query: 1 DMLIIMGSSLEVQPFASLIDMVPDSCPRLLINREK 105
D+LI++GSSL+V+P A + +P + P++LINRE+
Sbjct: 421 DLLIVIGSSLKVRPVAHIPSSIPATVPQILINREQ 455
>BT029138-1|ABJ17071.1| 371|Drosophila melanogaster RE06164p
protein.
Length = 371
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G T SI + S+HV LL++E+IPP+ V +L ++
Sbjct: 88 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGEYL 126
>AY061290-1|AAL28838.1| 384|Drosophila melanogaster LD20458p
protein.
Length = 384
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G T SI + S+HV LL++E+IPP+ V +L ++
Sbjct: 101 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 139
>AJ272159-1|CAB77445.1| 568|Drosophila melanogaster nicotinic
acetylcholine receptorDalpha 4 subunit protein.
Length = 568
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G T SI + S+HV LL++E+IPP+ V +L ++
Sbjct: 285 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 323
>AE014296-3767|AAF45409.2| 261|Drosophila melanogaster CG12414-PA
protein.
Length = 261
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G T SI + S+HV LL++E+IPP+ V +L ++
Sbjct: 101 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 139
>BT028847-1|ABI34228.1| 353|Drosophila melanogaster RT01114p
protein.
Length = 353
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Frame = -3
Query: 260 SKSSPHPSLSAKSWQPSSQS---------PSLATSL*EPSSNCKP---PHINPLI 132
SKS P L+ +SW PSSQS PS+ S EP++ + H+NP +
Sbjct: 292 SKSKSAPILATQSWHPSSQSQVPTSVHAAPSMNLSWGEPAAKSRKLSVNHMNPCV 346
>AE014297-509|AAF54087.1| 353|Drosophila melanogaster CG1046-PA
protein.
Length = 353
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Frame = -3
Query: 260 SKSSPHPSLSAKSWQPSSQS---------PSLATSL*EPSSNCKP---PHINPLI 132
SKS P L+ +SW PSSQS PS+ S EP++ + H+NP +
Sbjct: 292 SKSKSAPILATQSWHPSSQSQVPTSVHAAPSMNLSWGEPAAKSRKLSVNHMNPCV 346
>AE001572-10|AAD19800.1| 353|Drosophila melanogaster
DNA-binding-protein,transcription-factor protein.
Length = 353
Score = 29.1 bits (62), Expect = 6.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Frame = -3
Query: 260 SKSSPHPSLSAKSWQPSSQS---------PSLATSL*EPSSNCKP---PHINPLI 132
SKS P L+ +SW PSSQS PS+ S EP++ + H+NP +
Sbjct: 292 SKSKSAPILATQSWHPSSQSQVPTSVHAAPSMNLSWGEPAAKSRKLSVNHMNPCV 346
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,776,310
Number of Sequences: 53049
Number of extensions: 667820
Number of successful extensions: 2027
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2019
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -