BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1603 (745 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.020 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.020 DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.43 EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7 EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7 EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7 EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7 EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7 EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7 DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 24 1.7 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.7 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.7 AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 23 3.0 DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 4.0 DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 4.0 DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 4.0 DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 4.0 DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 4.0 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.3 AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.0 DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 9.2 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 30.3 bits (65), Expect = 0.020 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = -2 Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208 G T SI + S+HV LL++E+IPP+ V +L ++ Sbjct: 273 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 30.3 bits (65), Expect = 0.020 Identities = 15/39 (38%), Positives = 24/39 (61%) Frame = -2 Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208 G T SI + S+HV LL++E+IPP+ V +L ++ Sbjct: 273 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 25.8 bits (54), Expect = 0.43 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208 G + SI + S+ V LL+ E+IPP+ V +L F+ Sbjct: 269 GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFV 307 >EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 6 protein. Length = 461 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335 >EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 5 protein. Length = 461 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335 >EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 4 protein. Length = 461 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335 >EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 3 protein. Length = 461 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335 >EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 2 protein. Length = 461 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335 >EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine receptor subunitalpha 6 transcript variant 1 protein. Length = 461 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335 >DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. Length = 828 Score = 23.8 bits (49), Expect = 1.7 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Frame = +1 Query: 1 DMLIIMGSSLEVQPFASLIDMVP-----DSCPRLLINREKAGVRPPILRIRGLMCGGLQL 165 DML++ +LEV+ + L D VP LL NR + P I R G GG Sbjct: 516 DMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHP 575 Query: 166 DEGSYR 183 + S R Sbjct: 576 SDRSAR 581 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 370 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 403 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.8 bits (49), Expect = 1.7 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -2 Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256 W+P LL++S PG T+ +LG + G+ + E Sbjct: 370 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 403 >AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase protein. Length = 580 Score = 23.0 bits (47), Expect = 3.0 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = +3 Query: 513 YKHLLVLFNNNLKRYLVRNTQFNIRSIFMRLIQIKFSLGLRFLFDF 650 YK V F ++ + + + + F RL++ SLGL+ + DF Sbjct: 75 YKSPQVDFGYDISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILDF 120 >DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex determiner protein. Length = 186 Score = 22.6 bits (46), Expect = 4.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -1 Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203 +W +RS R RS P + S ++H+N Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNRTIHNN 93 >DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.6 bits (46), Expect = 4.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -1 Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203 +W +RS R RS P + S ++H+N Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNKTIHNN 93 >DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.6 bits (46), Expect = 4.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -1 Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203 +W +RS R RS P + S ++H+N Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNKTIHNN 93 >DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex determiner protein. Length = 184 Score = 22.6 bits (46), Expect = 4.0 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = -1 Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203 +W +RS R RS P + S ++H+N Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNKTIHNN 93 >DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine receptor alpha1subunit protein. Length = 601 Score = 22.6 bits (46), Expect = 4.0 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = -2 Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208 G + SI + S+ V LL+ E+IPP+ +L ++ Sbjct: 265 GEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL 303 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 22.2 bits (45), Expect = 5.3 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +3 Query: 54 YRYGPRFVSSTSDK 95 Y+ G RF+ TSDK Sbjct: 1557 YKMGDRFIGLTSDK 1570 >AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic acetylcholine receptoralpha-3 protein. Length = 537 Score = 21.8 bits (44), Expect = 7.0 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = -2 Query: 288 SVHVHGLLMLEVIPPSQSVCQVLAAFI 208 S+ V LL+ E+IPP+ +L ++ Sbjct: 290 SLTVFFLLLAEIIPPTSLAIPLLGKYL 316 >DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor protein. Length = 459 Score = 21.4 bits (43), Expect = 9.2 Identities = 9/32 (28%), Positives = 18/32 (56%) Frame = -3 Query: 482 IFQYFYLNHIMAFLRFIQVIRGTIKFEVNLIV 387 + +Y + +I LR+++ +RG + LIV Sbjct: 3 VSEYSFYGNISDELRYLEKVRGPKYLPLTLIV 34 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 207,737 Number of Sequences: 438 Number of extensions: 4326 Number of successful extensions: 24 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 24 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 23266665 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -