Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1603
(745 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.020
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.020
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.43
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 24 1.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 24 1.7
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 23 3.0
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 4.0
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 4.0
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 4.0
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 4.0
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 4.0
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 5.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 7.0
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 9.2
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.020
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G T SI + S+HV LL++E+IPP+ V +L ++
Sbjct: 273 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.020
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G T SI + S+HV LL++E+IPP+ V +L ++
Sbjct: 273 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 25.8 bits (54), Expect = 0.43
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G + SI + S+ V LL+ E+IPP+ V +L F+
Sbjct: 269 GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFV 307
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 23.8 bits (49), Expect = 1.7
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Frame = +1
Query: 1 DMLIIMGSSLEVQPFASLIDMVP-----DSCPRLLINREKAGVRPPILRIRGLMCGGLQL 165
DML++ +LEV+ + L D VP LL NR + P I R G GG
Sbjct: 516 DMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHP 575
Query: 166 DEGSYR 183
+ S R
Sbjct: 576 SDRSAR 581
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 370 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 403
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
W+P LL++S PG T+ +LG + G+ + E
Sbjct: 370 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 403
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 23.0 bits (47), Expect = 3.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 513 YKHLLVLFNNNLKRYLVRNTQFNIRSIFMRLIQIKFSLGLRFLFDF 650
YK V F ++ + + + + F RL++ SLGL+ + DF
Sbjct: 75 YKSPQVDFGYDISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILDF 120
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
+W +RS R RS P + S ++H+N
Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNRTIHNN 93
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
+W +RS R RS P + S ++H+N
Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNKTIHNN 93
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
+W +RS R RS P + S ++H+N
Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNKTIHNN 93
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 4.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
+W +RS R RS P + S ++H+N
Sbjct: 62 TWKERSRDRTERERSREPKIISSLSNKTIHNN 93
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 4.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
G + SI + S+ V LL+ E+IPP+ +L ++
Sbjct: 265 GEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL 303
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 54 YRYGPRFVSSTSDK 95
Y+ G RF+ TSDK
Sbjct: 1557 YKMGDRFIGLTSDK 1570
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 288 SVHVHGLLMLEVIPPSQSVCQVLAAFI 208
S+ V LL+ E+IPP+ +L ++
Sbjct: 290 SLTVFFLLLAEIIPPTSLAIPLLGKYL 316
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 9.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 482 IFQYFYLNHIMAFLRFIQVIRGTIKFEVNLIV 387
+ +Y + +I LR+++ +RG + LIV
Sbjct: 3 VSEYSFYGNISDELRYLEKVRGPKYLPLTLIV 34
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,737
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 24
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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