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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1603
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    30   0.020
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    30   0.020
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.43 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
           G   T SI +  S+HV  LL++E+IPP+  V  +L  ++
Sbjct: 273 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
           G   T SI +  S+HV  LL++E+IPP+  V  +L  ++
Sbjct: 273 GEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
           G   + SI +  S+ V  LL+ E+IPP+  V  +L  F+
Sbjct: 269 GEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFV 307


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 302 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 335


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +1

Query: 1   DMLIIMGSSLEVQPFASLIDMVP-----DSCPRLLINREKAGVRPPILRIRGLMCGGLQL 165
           DML++   +LEV+ +  L D VP          LL NR    + P I R  G   GG   
Sbjct: 516 DMLVLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHP 575

Query: 166 DEGSYR 183
            + S R
Sbjct: 576 SDRSAR 581


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 370 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 403


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 360 WVPRLLLKVSVPGHGETQSIVLGPSVHVHGLLMLE 256
           W+P  LL++S PG   T+  +LG +    G+ + E
Sbjct: 370 WLP-CLLRMSRPGKKITKKTILGGNRRAKGMELQE 403


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 513 YKHLLVLFNNNLKRYLVRNTQFNIRSIFMRLIQIKFSLGLRFLFDF 650
           YK   V F  ++  +   +  +   + F RL++   SLGL+ + DF
Sbjct: 75  YKSPQVDFGYDISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILDF 120


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
           +W +RS  R    RS  P  +   S  ++H+N
Sbjct: 62  TWKERSRDRTERERSREPKIISSLSNRTIHNN 93


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
           +W +RS  R    RS  P  +   S  ++H+N
Sbjct: 62  TWKERSRDRTERERSREPKIISSLSNKTIHNN 93


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
           +W +RS  R    RS  P  +   S  ++H+N
Sbjct: 62  TWKERSRDRTERERSREPKIISSLSNKTIHNN 93


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 298 SWSKRSCSRATNARSHPPIPVCLPSPGSLHHN 203
           +W +RS  R    RS  P  +   S  ++H+N
Sbjct: 62  TWKERSRDRTERERSREPKIISSLSNKTIHNN 93


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 324 GHGETQSIVLGPSVHVHGLLMLEVIPPSQSVCQVLAAFI 208
           G   + SI +  S+ V  LL+ E+IPP+     +L  ++
Sbjct: 265 GEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL 303


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 54   YRYGPRFVSSTSDK 95
            Y+ G RF+  TSDK
Sbjct: 1557 YKMGDRFIGLTSDK 1570


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 288 SVHVHGLLMLEVIPPSQSVCQVLAAFI 208
           S+ V  LL+ E+IPP+     +L  ++
Sbjct: 290 SLTVFFLLLAEIIPPTSLAIPLLGKYL 316


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 482 IFQYFYLNHIMAFLRFIQVIRGTIKFEVNLIV 387
           + +Y +  +I   LR+++ +RG     + LIV
Sbjct: 3   VSEYSFYGNISDELRYLEKVRGPKYLPLTLIV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,737
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 24
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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