Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1602
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.2  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 413 VTLYHLKICC*F**LMQNNYKSKIMYIGNKVYEENMTSHL*NYKDPTQKMCV 258
           +TL+ + IC       + N   K+MY GN    + +   L N  +P  + CV
Sbjct: 4   ITLFMIIIC------FERNLSYKVMYNGNNNVTDLVEYVLLNEDNPCARKCV 49


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 14  GDGNHLPSGGPYARLPTKAIKNKLDFVFNSKIDL 115
           G GN+ P GGP + +         D  F+S  +L
Sbjct: 530 GSGNNQPPGGPSSHVSAVLTCKVCDQAFSSLKEL 563


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 326 KVYEENMTSHL*NYKDPTQKMCVFGK-----HRLKFSNRKNVEEGDGVKETDRYLRPFIS 162
           ++Y E + +++ N + P +   +F K       L+    +N E    +K  ++ L PF++
Sbjct: 482 EIYLEALRAYVDNRRKP-KPGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKNKKLPPFLA 540

Query: 161 YLWSFD 144
            +W  D
Sbjct: 541 EIWDVD 546


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,973
Number of Sequences: 336
Number of extensions: 3533
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)