BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1602 (764 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.1 SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 6.8 SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 6.8 SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.0 >SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1073 Score = 26.2 bits (55), Expect = 5.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 290 NYKDPTQKMCVFGKHRLKFSNRKNVEEGDGVKETD 186 N KDP +C GKH L ++ + + GVK D Sbjct: 876 NMKDPIYSVCSIGKHGLCYATGRKI----GVKMLD 906 >SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 25.8 bits (54), Expect = 6.8 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = -1 Query: 323 VYEENMTSHL*NYKDPTQKMCVFGKHRLKFSNRKNVE 213 VY+ + L ++ Q MC++G + S++KN+E Sbjct: 91 VYQISTFKKLFSFGAHCQNMCLYGDELIVLSSKKNLE 127 >SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr 1|||Manual Length = 886 Score = 25.8 bits (54), Expect = 6.8 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 248 VFQKHTFFELGLYNSKGVMSYFLRKLCFR 334 + +++TF EL L+ S V +YF R +C+R Sbjct: 584 LLEENTFQELFLHWSPLVRAYFQRLVCWR 612 >SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 25.4 bits (53), Expect = 9.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -2 Query: 667 HQYTCCPNFLPSENTTVNKKCKAQL 593 H YTC +LP++ + N K KA+L Sbjct: 368 HWYTCFDGYLPAQERS-NLKSKAEL 391 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,997,075 Number of Sequences: 5004 Number of extensions: 59396 Number of successful extensions: 138 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 138 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 367316502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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