Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1602
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   6.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   6.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   9.0  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 290 NYKDPTQKMCVFGKHRLKFSNRKNVEEGDGVKETD 186
           N KDP   +C  GKH L ++  + +    GVK  D
Sbjct: 876 NMKDPIYSVCSIGKHGLCYATGRKI----GVKMLD 906


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 323 VYEENMTSHL*NYKDPTQKMCVFGKHRLKFSNRKNVE 213
           VY+ +    L ++    Q MC++G   +  S++KN+E
Sbjct: 91  VYQISTFKKLFSFGAHCQNMCLYGDELIVLSSKKNLE 127


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 248 VFQKHTFFELGLYNSKGVMSYFLRKLCFR 334
           + +++TF EL L+ S  V +YF R +C+R
Sbjct: 584 LLEENTFQELFLHWSPLVRAYFQRLVCWR 612


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 667 HQYTCCPNFLPSENTTVNKKCKAQL 593
           H YTC   +LP++  + N K KA+L
Sbjct: 368 HWYTCFDGYLPAQERS-NLKSKAEL 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,075
Number of Sequences: 5004
Number of extensions: 59396
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)