Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1602
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870...    29   5.4  
12_02_0787 + 23149224-23149835                                         28   9.4  
08_02_1513 + 27633432-27634226                                         28   9.4  

>08_02_1563 +
           27886202-27886446,27886533-27886618,27886942-27887030,
           27887193-27887432,27887527-27887648,27888103-27888178,
           27888276-27888383,27888465-27888641,27888959-27889176,
           27889313-27889445,27889584-27889807,27890052-27890205,
           27890297-27890380
          Length = 651

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 281 DPTQKMCVFGKHRL-KFSNRKNVEEGDGVKETD 186
           DPT   C F KHR+  FS R+  E  D  K  D
Sbjct: 437 DPTLLCCAFKKHRIYLFSRREPEEPEDATKGRD 469


>12_02_0787 + 23149224-23149835
          Length = 203

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 135 VAEKGRSRSIFELKTKSNLFFIAFVGRRAYGPPDGK 28
           VAEKGR R I  +K K  L ++         PP GK
Sbjct: 85  VAEKGRLRKITGVKAKELLIWVTLHEIAVDDPPTGK 120


>08_02_1513 + 27633432-27634226
          Length = 264

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 533 RVLK*GRTVGPKSQRLHFARELGFAFFIHCCIF 631
           RV K  RT+G   QRL    EL F   +HC +F
Sbjct: 220 RVQKQLRTLGDTIQRLEDGLELLFRRLVHCRVF 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,588
Number of Sequences: 37544
Number of extensions: 323385
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)