BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1602 (764 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 29 5.4 12_02_0787 + 23149224-23149835 28 9.4 08_02_1513 + 27633432-27634226 28 9.4 >08_02_1563 + 27886202-27886446,27886533-27886618,27886942-27887030, 27887193-27887432,27887527-27887648,27888103-27888178, 27888276-27888383,27888465-27888641,27888959-27889176, 27889313-27889445,27889584-27889807,27890052-27890205, 27890297-27890380 Length = 651 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = -1 Query: 281 DPTQKMCVFGKHRL-KFSNRKNVEEGDGVKETD 186 DPT C F KHR+ FS R+ E D K D Sbjct: 437 DPTLLCCAFKKHRIYLFSRREPEEPEDATKGRD 469 >12_02_0787 + 23149224-23149835 Length = 203 Score = 27.9 bits (59), Expect = 9.4 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -3 Query: 135 VAEKGRSRSIFELKTKSNLFFIAFVGRRAYGPPDGK 28 VAEKGR R I +K K L ++ PP GK Sbjct: 85 VAEKGRLRKITGVKAKELLIWVTLHEIAVDDPPTGK 120 >08_02_1513 + 27633432-27634226 Length = 264 Score = 27.9 bits (59), Expect = 9.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +2 Query: 533 RVLK*GRTVGPKSQRLHFARELGFAFFIHCCIF 631 RV K RT+G QRL EL F +HC +F Sbjct: 220 RVQKQLRTLGDTIQRLEDGLELLFRRLVHCRVF 252 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,755,588 Number of Sequences: 37544 Number of extensions: 323385 Number of successful extensions: 527 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 515 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 527 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2051430072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -