Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1602
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   6.3  
AC024746-4|AAF60398.1|  162|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal tr...    28   8.4  
AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation su...    28   8.4  

>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 276 WVFIILKV*CHIFFVNFVS 332
           WVFI LKV C  F+ +FVS
Sbjct: 23  WVFIYLKVRCIRFYADFVS 41


>AC024746-4|AAF60398.1|  162|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.7 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 603 LHFLFTVVFSLGRKFGQHVYW*YHVL*KFQNRTKIVDSGRINWL 734
           L F+F +V S  ++FG   Y   H L  FQ   + VD+G   WL
Sbjct: 6   LFFIFLIVNSDAQRFGSARYMLQHHLDVFQ---QFVDAGNKKWL 46


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 224 KNVEEGDGVKETDRYLRPF-ISYLWS 150
           KN+ EG   + TD Y+RPF IS  WS
Sbjct: 302 KNMLEGFLKQPTDHYIRPFWISAFWS 327


>AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal
           triglyceride transferprotein protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 254 GKHRLKFSNRKNVEEGDGVKETDRYLRPFISYLWSF 147
           GKH+ K  NRK V  G   +  D  +R   SYL  F
Sbjct: 855 GKHKKKTLNRKRVHPGVTYRLDDSTIRQCNSYLEQF 890


>AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation
           suppressor of clk-1protein 4 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 254 GKHRLKFSNRKNVEEGDGVKETDRYLRPFISYLWSF 147
           GKH+ K  NRK V  G   +  D  +R   SYL  F
Sbjct: 855 GKHKKKTLNRKRVHPGVTYRLDDSTIRQCNSYLEQF 890


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,344
Number of Sequences: 27780
Number of extensions: 328117
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)