Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1602
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.4  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   7.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 573 SDFTLPVSWALHFLFTVVFSLGRKFGQHVYW*Y 671
           +D T+  S        +VF+L R+ G H++  Y
Sbjct: 189 TDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTY 221


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 649 PNFLPSENTTV 617
           P+F PS+NTT+
Sbjct: 23  PDFAPSKNTTI 33


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 245 RLKFSNRKNVEEGDGVKETDRYLRPFISYLWSF 147
           R K +  K   +GDG     +      +YLW F
Sbjct: 431 RSKKNKLKKPRQGDGAAVKRKSREGSTTYLWEF 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,699
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)