Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1602
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    30   1.9  
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    28   5.9  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    28   7.8  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    28   7.8  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 676  T*YHQYTCCPNFLPSENTTVNKKCKAQLTGKVKSLTFGPDCTP 548
            T YH+    PN+L S N  ++    AQ +  V  + F P  +P
Sbjct: 1501 TPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSP 1543


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 661 YTCCPNFLPSENTTVNKKCKAQLTGKVKSLTFGPD 557
           Y    N+L S++T + K+ KA  T   KSL F  D
Sbjct: 70  YDSIRNYLASKSTALAKRLKANETKNSKSLVFSMD 104


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 144 LLKVAEKGRSRSIFELKTK----SNLFFIA-FVGRRAYGPPDGKWLPSPMDFS 1
           L+ +  K  +RS+ E+ T       L +IA   GR    P  G+W P+P D S
Sbjct: 291 LVDMKRKANTRSLKEMATMLRSGGQLIWIAPSGGRDRPNPSTGEWFPAPFDAS 343


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 144 LLKVAEKGRSRSIFELKTK----SNLFFIA-FVGRRAYGPPDGKWLPSPMDFS 1
           L+ +  K  +RS+ E+ T       L +IA   GR    P  G+W P+P D S
Sbjct: 291 LVDMKRKANTRSLKEMATMLRSGGQLIWIAPSGGRDRPNPSTGEWFPAPFDAS 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,684
Number of Sequences: 28952
Number of extensions: 291283
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)