BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1602 (764 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 30 1.9 At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 28 5.9 At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c... 28 7.8 At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c... 28 7.8 >At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest subunit (RPB205) (RPII) (RPB1) nearly identical to P|P18616 DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) {Arabidopsis thaliana} Length = 1840 Score = 29.9 bits (64), Expect = 1.9 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -2 Query: 676 T*YHQYTCCPNFLPSENTTVNKKCKAQLTGKVKSLTFGPDCTP 548 T YH+ PN+L S N ++ AQ + V + F P +P Sbjct: 1501 TPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSP 1543 >At3g28510.1 68416.m03561 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 530 Score = 28.3 bits (60), Expect = 5.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 661 YTCCPNFLPSENTTVNKKCKAQLTGKVKSLTFGPD 557 Y N+L S++T + K+ KA T KSL F D Sbjct: 70 YDSIRNYLASKSTALAKRLKANETKNSKSLVFSMD 104 >At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH Glycerol-3-phosphate acyltransferase, chloroplast precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis thaliana}; contains Pfam profile PF01553: Acyltransferase Length = 459 Score = 27.9 bits (59), Expect = 7.8 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = -3 Query: 144 LLKVAEKGRSRSIFELKTK----SNLFFIA-FVGRRAYGPPDGKWLPSPMDFS 1 L+ + K +RS+ E+ T L +IA GR P G+W P+P D S Sbjct: 291 LVDMKRKANTRSLKEMATMLRSGGQLIWIAPSGGRDRPNPSTGEWFPAPFDAS 343 >At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH Glycerol-3-phosphate acyltransferase, chloroplast precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis thaliana}; contains Pfam profile PF01553: Acyltransferase Length = 459 Score = 27.9 bits (59), Expect = 7.8 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = -3 Query: 144 LLKVAEKGRSRSIFELKTK----SNLFFIA-FVGRRAYGPPDGKWLPSPMDFS 1 L+ + K +RS+ E+ T L +IA GR P G+W P+P D S Sbjct: 291 LVDMKRKANTRSLKEMATMLRSGGQLIWIAPSGGRDRPNPSTGEWFPAPFDAS 343 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,130,684 Number of Sequences: 28952 Number of extensions: 291283 Number of successful extensions: 518 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 513 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 518 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1712086600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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