Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1601
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.71 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    21   8.7  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   8.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 774 VTYTYIL*LSLCMLFVFLSLSIRTTNNMIICCTVIMFNV 658
           + +T  L   LC+   F +  I T + ++ CC  I FN+
Sbjct: 154 IIFTVHLLFLLCIYHFFCAFIIFTMH-LLFCCAFIFFNM 191


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 566  CIKLGVFYYLT-PF*YKIII 622
            C+K GV YY+T P  Y +++
Sbjct: 1001 CLKYGVIYYVTVPSMYLLLV 1020


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 566  CIKLGVFYYLT-PF*YKIII 622
            C+K GV YY+T P  Y +++
Sbjct: 1001 CLKYGVIYYVTVPSMYLLLV 1020


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +2

Query: 362 QRAARSLDAGSPVTRCPKSSFRMASCG 442
           +R  R+LDA  P      S F    CG
Sbjct: 554 ERTFRNLDANRPTGGDALSEFNFCGCG 580


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/52 (21%), Positives = 20/52 (38%)
 Frame = +2

Query: 623 HCFQDETSPSQSTLNMITVQHIIMLFVVLMLSERKTNNIHNDSYKIYVYVTD 778
           H   +  +P      + T+ HI ++  +   S     N    S  + V +TD
Sbjct: 12  HSLGNTVTPVSLRFKLYTIVHIFIIIALYAHSSYGRENFIYGSMNMTVAITD 63


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 481 YTFMFWVEDNGLATWVSYINCCKLWLKKMHKIGCFL 588
           +TF  W       T   Y+ C  L   K  KIG  L
Sbjct: 55  FTFKSWKVLYTSLTSFGYLFCASLSFYKAFKIGILL 90


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,055
Number of Sequences: 336
Number of extensions: 4302
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)