Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1601
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    50   3e-07
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         48   2e-06
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   3.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   5.5  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    26   7.2  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   7.2  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   9.5  

>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +3

Query: 261 LCLAFNDIAPQAPVHFLVIPKRRIARLQD-AENNDNELLGHLMLVARSLGAQRAPSGWRL 437
           L LAF DIAP +  H LVIPK   A++ + ++ +  ++L  +  V +++G    P  + +
Sbjct: 23  LSLAFLDIAPTSKGHALVIPKEHAAKMHELSDESCADILPLVKKVTKAIG----PENYNV 78

Query: 438 VVNNGKDGAQSVYHLHLHVL 497
           + NNG+   Q V H+H H++
Sbjct: 79  LQNNGRIAHQFVDHVHFHII 98


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +3

Query: 237 SRYHIRDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENND-NELLGHLMLVARSLGAQ 413
           S+   R  L  AF ++ P  P H LVIP+R + RL+D   ++  +L   +  V + +   
Sbjct: 14  SQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIEKV 73

Query: 414 RAPSGWRLVVNNGKDGAQSVYHLHLHVL 497
            + S   + + +G D  Q+V H+H+H++
Sbjct: 74  FSASASNIGIQDGVDAGQTVPHVHVHII 101


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -3

Query: 299 WRLRCYVVKSKT*IISYMISALISLDMILSNIVGPIVVVVSCALRTSSLYGRFTATAEP 123
           W+L+  + K +    S  +   +S D +LSN   PI   +S +L +S     F+    P
Sbjct: 191 WKLKSKIHKLRAHGTSLKVGCALSTDDVLSNDFLPISAPISSSLGSSIATFSFSPVGTP 249


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 411  QRAPSGWRLVVNNGKDG 461
            Q+ PSGW L + NG +G
Sbjct: 1137 QKEPSGWWLALKNGAEG 1153


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 207 YCGPDRSGRFVC 172
           YCGP+  G++VC
Sbjct: 434 YCGPEADGKYVC 445


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 195  DRSGRFVCSADFVAVRPLHSHSRTPRQIIDVRRISLFQSKF 73
            DR G+F+ +ADF A+R L S         D+   + F   F
Sbjct: 981  DRPGKFLPAADFDAIRKLLSEKFGVSSDCDIAAYTQFPGVF 1021


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 94  YPTNIYDLSRGSAVAVKR 147
           YP ++YDLSR S+ +V++
Sbjct: 177 YPVDLYDLSRTSSYSVQK 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,289
Number of Sequences: 5004
Number of extensions: 67913
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)