BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1601 (805 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 62 4e-10 03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 60 3e-09 12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 51 1e-06 04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 38 0.009 11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 33 0.27 12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 29 3.3 12_01_0127 + 963723-963828,965057-965193,965470-965577,965669-96... 29 4.3 02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 29 4.3 11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 28 7.6 01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 7.6 >06_03_1059 + 27273267-27273316,27274077-27274163,27274245-27274392, 27274615-27274732,27274798-27274859 Length = 154 Score = 62.5 bits (145), Expect = 4e-10 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 3/81 (3%) Frame = +3 Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425 D+ LAF DI PQAPVH LVIPK R + L AE E+LG+L+ A+ + + Sbjct: 63 DEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEILGYLLYAAKIVAEKEGIAE 122 Query: 426 GWRLVVNNGKDGAQSVYHLHL 488 G+R+V+NNG G +Y LH+ Sbjct: 123 GYRVVINNGPKG---LYMLHI 140 Score = 39.1 bits (87), Expect = 0.004 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +1 Query: 166 RRAHETTTTIGPTIFDKIISKEIRADIIYE 255 + A T T GPTIFDKII+KEI ++++YE Sbjct: 33 KAAAATADTGGPTIFDKIIAKEIPSNVVYE 62 >03_02_0838 + 11641484-11642030,11643614-11643650,11643784-11643841, 11646176-11646265,11646796-11646913,11648093-11648277, 11648330-11648455,11648578-11648634,11648741-11648821, 11649068-11649102,11649265-11649354,11649443-11649599, 11649785-11649901 Length = 565 Score = 59.7 bits (138), Expect = 3e-09 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Frame = +3 Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425 D+ LAF DI PQAP H ++IPK + + L AE E+LG+L+ VA+ + Q Sbjct: 212 DEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEILGYLLYVAKVVAKQEGLED 271 Query: 426 GWRLVVNNGKDGA 464 G+R+V+N+G G+ Sbjct: 272 GYRIVINDGPSGS 284 >12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331, 7295777-7295843,7296461-7296516,7296638-7296691, 7296836-7296961 Length = 225 Score = 50.8 bits (116), Expect = 1e-06 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%) Frame = +3 Query: 228 GDQSRYHI-RDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENN-DNELLGHLMLVARS 401 G++ Y + DD+CL D P + H L+IPKR LQ + + L L++ + Sbjct: 81 GNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPLISSA 140 Query: 402 LGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVLGGRQ 509 + + ++VNNGK Q ++H H+H++ R+ Sbjct: 141 IVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRK 176 >04_04_0631 - 26728144-26728228,26728321-26728398,26728584-26728650, 26728748-26728824,26729961-26730012,26730248-26730294, 26730457-26730527 Length = 158 Score = 37.9 bits (84), Expect = 0.009 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Frame = +3 Query: 303 HFLVIPKRRIARLQDAENN--DNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQSVY 476 H+LVIP I + + + D++L+ H++ V R L + AP+ + SV Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117 Query: 477 HLHLHVL 497 HLHLH L Sbjct: 118 HLHLHCL 124 >11_04_0258 + 15489733-15490054,15490150-15490339,15490438-15490910, 15501203-15501513 Length = 431 Score = 33.1 bits (72), Expect = 0.27 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +3 Query: 303 HFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQS 470 H ++ P + L+DAEN +++G LM QR GW V GK A+S Sbjct: 99 HLVLPPGSNLRSLEDAENEAAKMIGVLMAPEYGRMLQRLVDGWANRVYEGKLPARS 154 >12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966, 8025102-8026215 Length = 466 Score = 29.5 bits (63), Expect = 3.3 Identities = 17/45 (37%), Positives = 29/45 (64%) Frame = +1 Query: 10 YNGVYLLVSTKMFNKVFQRALKFRLKKTYPTNIYDLSRGSAVAVK 144 + G+Y ++S M +KVFQRAL+ K P +I D++R ++V+ Sbjct: 400 HQGMYSVISG-MVDKVFQRALR---KLPVPMSIRDMARQWGISVR 440 >12_01_0127 + 963723-963828,965057-965193,965470-965577,965669-965785 Length = 155 Score = 29.1 bits (62), Expect = 4.3 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Frame = +3 Query: 312 VIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-----RAPSGWRLV--VNNGKDGAQS 470 V PKR + R D +N+ L + A+ +G + +A S + + +G + Q+ Sbjct: 36 VCPKREVKRFADLSSNETS---DLWVTAKEVGVRLEQYHKASSLTFAIQCLQDGPEAGQT 92 Query: 471 VYHLHLHVL 497 V H+H+HV+ Sbjct: 93 VSHVHIHVI 101 >02_03_0406 + 18663986-18664059,18665082-18665405,18665499-18665559, 18666136-18666282,18666368-18666492,18666619-18666648, 18666689-18666893,18667532-18667741,18667886-18667888, 18670034-18670942,18671239-18672069 Length = 972 Score = 29.1 bits (62), Expect = 4.3 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +1 Query: 388 W*PGHSVPKEL-LQDGVLWLTMAKTELKVFIIYTFMFWVED 507 W +VP+ L DG+ WL ++ T + I TFM W+++ Sbjct: 151 WSEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQE 191 >11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-909750, 909946-910033,910326-910560,910625-910715 Length = 288 Score = 28.3 bits (60), Expect = 7.6 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%) Frame = +3 Query: 312 VIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-----RAPSGWRLV--VNNGKDGAQS 470 V PKR + R D +N+ + L + A+ +G + +A S + + +G Q+ Sbjct: 36 VCPKREVKRFADLSSNE---ISDLWVTAKEVGIRLEQYHKASSLTFAIQCLQDGPQAGQT 92 Query: 471 VYHLHLHVL 497 V H+H+HV+ Sbjct: 93 VPHVHIHVI 101 >01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815, 6501915-6502156,6502229-6502457,6503020-6503184, 6503279-6503605,6504150-6504191,6504333-6504400, 6504748-6504934,6506249-6506311,6506748-6506790, 6506919-6507019,6507110-6507184,6507359-6507445, 6507593-6507682,6507906-6507992,6508585-6508783, 6509113-6509177,6509502-6509606,6509726-6509871, 6510100-6510224,6510335-6510437,6510482-6510596, 6510734-6510869,6511298-6511387,6511484-6511578, 6511698-6511763,6511868-6511936,6512034-6512147, 6512241-6512448,6512545-6512600,6512818-6513552 Length = 1671 Score = 28.3 bits (60), Expect = 7.6 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +1 Query: 676 CATYYHVVCCSNAE*KKDKQHTQ 744 C+TYYH +C S A + + Q+++ Sbjct: 704 CSTYYHAMCASRAGYRMELQYSE 726 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,791,765 Number of Sequences: 37544 Number of extensions: 429097 Number of successful extensions: 1070 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1033 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1068 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2185924824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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