Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1601
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 62 4e-10
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 60 3e-09
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 51 1e-06
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 38 0.009
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 33 0.27
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 29 3.3
12_01_0127 + 963723-963828,965057-965193,965470-965577,965669-96... 29 4.3
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 29 4.3
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 28 7.6
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 7.6
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +3
Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425
D+ LAF DI PQAPVH LVIPK R + L AE E+LG+L+ A+ + +
Sbjct: 63 DEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEILGYLLYAAKIVAEKEGIAE 122
Query: 426 GWRLVVNNGKDGAQSVYHLHL 488
G+R+V+NNG G +Y LH+
Sbjct: 123 GYRVVINNGPKG---LYMLHI 140
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +1
Query: 166 RRAHETTTTIGPTIFDKIISKEIRADIIYE 255
+ A T T GPTIFDKII+KEI ++++YE
Sbjct: 33 KAAAATADTGGPTIFDKIIAKEIPSNVVYE 62
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +3
Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425
D+ LAF DI PQAP H ++IPK + + L AE E+LG+L+ VA+ + Q
Sbjct: 212 DEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEILGYLLYVAKVVAKQEGLED 271
Query: 426 GWRLVVNNGKDGA 464
G+R+V+N+G G+
Sbjct: 272 GYRIVINDGPSGS 284
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +3
Query: 228 GDQSRYHI-RDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENN-DNELLGHLMLVARS 401
G++ Y + DD+CL D P + H L+IPKR LQ + + L L++ +
Sbjct: 81 GNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPLISSA 140
Query: 402 LGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVLGGRQ 509
+ + ++VNNGK Q ++H H+H++ R+
Sbjct: 141 IVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRK 176
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 303 HFLVIPKRRIARLQDAENN--DNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQSVY 476
H+LVIP I + + + D++L+ H++ V R L + AP+ + SV
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 477 HLHLHVL 497
HLHLH L
Sbjct: 118 HLHLHCL 124
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 303 HFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQS 470
H ++ P + L+DAEN +++G LM QR GW V GK A+S
Sbjct: 99 HLVLPPGSNLRSLEDAENEAAKMIGVLMAPEYGRMLQRLVDGWANRVYEGKLPARS 154
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 10 YNGVYLLVSTKMFNKVFQRALKFRLKKTYPTNIYDLSRGSAVAVK 144
+ G+Y ++S M +KVFQRAL+ K P +I D++R ++V+
Sbjct: 400 HQGMYSVISG-MVDKVFQRALR---KLPVPMSIRDMARQWGISVR 440
>12_01_0127 +
963723-963828,965057-965193,965470-965577,965669-965785
Length = 155
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 312 VIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-----RAPSGWRLV--VNNGKDGAQS 470
V PKR + R D +N+ L + A+ +G + +A S + + +G + Q+
Sbjct: 36 VCPKREVKRFADLSSNETS---DLWVTAKEVGVRLEQYHKASSLTFAIQCLQDGPEAGQT 92
Query: 471 VYHLHLHVL 497
V H+H+HV+
Sbjct: 93 VSHVHIHVI 101
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 388 W*PGHSVPKEL-LQDGVLWLTMAKTELKVFIIYTFMFWVED 507
W +VP+ L DG+ WL ++ T + I TFM W+++
Sbjct: 151 WSEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQE 191
>11_01_0117 +
906419-906524,907531-907667,907948-908055,909649-909750,
909946-910033,910326-910560,910625-910715
Length = 288
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 312 VIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-----RAPSGWRLV--VNNGKDGAQS 470
V PKR + R D +N+ + L + A+ +G + +A S + + +G Q+
Sbjct: 36 VCPKREVKRFADLSSNE---ISDLWVTAKEVGIRLEQYHKASSLTFAIQCLQDGPQAGQT 92
Query: 471 VYHLHLHVL 497
V H+H+HV+
Sbjct: 93 VPHVHIHVI 101
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 676 CATYYHVVCCSNAE*KKDKQHTQ 744
C+TYYH +C S A + + Q+++
Sbjct: 704 CSTYYHAMCASRAGYRMELQYSE 726
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,791,765
Number of Sequences: 37544
Number of extensions: 429097
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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