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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1601
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743...    62   4e-10
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    60   3e-09
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    51   1e-06
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286...    38   0.009
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    33   0.27 
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802...    29   3.3  
12_01_0127 + 963723-963828,965057-965193,965470-965577,965669-96...    29   4.3  
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655...    29   4.3  
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90...    28   7.6  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    28   7.6  

>06_03_1059 +
           27273267-27273316,27274077-27274163,27274245-27274392,
           27274615-27274732,27274798-27274859
          Length = 154

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425
           D+  LAF DI PQAPVH LVIPK R  +  L  AE    E+LG+L+  A+ +  +     
Sbjct: 63  DEKVLAFRDINPQAPVHVLVIPKIRDGLTGLDKAEPRHVEILGYLLYAAKIVAEKEGIAE 122

Query: 426 GWRLVVNNGKDGAQSVYHLHL 488
           G+R+V+NNG  G   +Y LH+
Sbjct: 123 GYRVVINNGPKG---LYMLHI 140



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 166 RRAHETTTTIGPTIFDKIISKEIRADIIYE 255
           + A  T  T GPTIFDKII+KEI ++++YE
Sbjct: 33  KAAAATADTGGPTIFDKIIAKEIPSNVVYE 62


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425
           D+  LAF DI PQAP H ++IPK +  +  L  AE    E+LG+L+ VA+ +  Q     
Sbjct: 212 DEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEERHVEILGYLLYVAKVVAKQEGLED 271

Query: 426 GWRLVVNNGKDGA 464
           G+R+V+N+G  G+
Sbjct: 272 GYRIVINDGPSGS 284


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
 Frame = +3

Query: 228 GDQSRYHI-RDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENN-DNELLGHLMLVARS 401
           G++  Y +  DD+CL   D  P +  H L+IPKR    LQ    +    +   L L++ +
Sbjct: 81  GNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPLISSA 140

Query: 402 LGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVLGGRQ 509
           +        + ++VNNGK   Q ++H H+H++  R+
Sbjct: 141 IVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRK 176


>04_04_0631 -
           26728144-26728228,26728321-26728398,26728584-26728650,
           26728748-26728824,26729961-26730012,26730248-26730294,
           26730457-26730527
          Length = 158

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 303 HFLVIPKRRIARLQDAENN--DNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQSVY 476
           H+LVIP   I  + + +    D++L+ H++ V R L  + AP+         +    SV 
Sbjct: 58  HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117

Query: 477 HLHLHVL 497
           HLHLH L
Sbjct: 118 HLHLHCL 124


>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 303 HFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQS 470
           H ++ P   +  L+DAEN   +++G LM        QR   GW   V  GK  A+S
Sbjct: 99  HLVLPPGSNLRSLEDAENEAAKMIGVLMAPEYGRMLQRLVDGWANRVYEGKLPARS 154


>12_01_0855 +
           8023266-8023459,8023830-8023866,8023911-8023966,
           8025102-8026215
          Length = 466

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/45 (37%), Positives = 29/45 (64%)
 Frame = +1

Query: 10  YNGVYLLVSTKMFNKVFQRALKFRLKKTYPTNIYDLSRGSAVAVK 144
           + G+Y ++S  M +KVFQRAL+   K   P +I D++R   ++V+
Sbjct: 400 HQGMYSVISG-MVDKVFQRALR---KLPVPMSIRDMARQWGISVR 440


>12_01_0127 +
           963723-963828,965057-965193,965470-965577,965669-965785
          Length = 155

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +3

Query: 312 VIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-----RAPSGWRLV--VNNGKDGAQS 470
           V PKR + R  D  +N+      L + A+ +G +     +A S    +  + +G +  Q+
Sbjct: 36  VCPKREVKRFADLSSNETS---DLWVTAKEVGVRLEQYHKASSLTFAIQCLQDGPEAGQT 92

Query: 471 VYHLHLHVL 497
           V H+H+HV+
Sbjct: 93  VSHVHIHVI 101


>02_03_0406 +
           18663986-18664059,18665082-18665405,18665499-18665559,
           18666136-18666282,18666368-18666492,18666619-18666648,
           18666689-18666893,18667532-18667741,18667886-18667888,
           18670034-18670942,18671239-18672069
          Length = 972

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 388 W*PGHSVPKEL-LQDGVLWLTMAKTELKVFIIYTFMFWVED 507
           W    +VP+   L DG+ WL ++ T +   I  TFM W+++
Sbjct: 151 WSEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQE 191


>11_01_0117 +
           906419-906524,907531-907667,907948-908055,909649-909750,
           909946-910033,910326-910560,910625-910715
          Length = 288

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +3

Query: 312 VIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ-----RAPSGWRLV--VNNGKDGAQS 470
           V PKR + R  D  +N+   +  L + A+ +G +     +A S    +  + +G    Q+
Sbjct: 36  VCPKREVKRFADLSSNE---ISDLWVTAKEVGIRLEQYHKASSLTFAIQCLQDGPQAGQT 92

Query: 471 VYHLHLHVL 497
           V H+H+HV+
Sbjct: 93  VPHVHIHVI 101


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 676 CATYYHVVCCSNAE*KKDKQHTQ 744
           C+TYYH +C S A  + + Q+++
Sbjct: 704 CSTYYHAMCASRAGYRMELQYSE 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,791,765
Number of Sequences: 37544
Number of extensions: 429097
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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