Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1601
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   83   2e-16
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)                    49   4e-06
SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)                   44   2e-04
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)            31   1.1  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)                     29   4.4  

>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 38/73 (52%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQR--APSG 428
           DD CLAF DI PQAP H LVIPK+ I +L  A+++D +LLG L++VAR + A +  A  G
Sbjct: 24  DDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLLGRLLIVARKVAAMQNLANDG 83

Query: 429 WRLVVNNGKDGAQ 467
           +R+++N+GK+G Q
Sbjct: 84  YRIIINDGKNGGQ 96



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +1

Query: 196 GPTIFDKIISKEIRADIIYE 255
           G TIF KII KEI A+I++E
Sbjct: 4   GDTIFGKIIRKEIPAEILHE 23


>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
          Length = 492

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 30/50 (60%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +1

Query: 115 LSRGSAVAVKRPY--SDEVRRAHETTTTIG-PTIFDKIISKEIRADIIYE 255
           L  GS    K P   SDEV +A E   T G PTIFDKI+SKEI ADIIYE
Sbjct: 34  LLAGSREFCKTPILQSDEVEKAKEAAKTKGEPTIFDKILSKEIPADIIYE 83


>SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32)
          Length = 161

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +3

Query: 252 RDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENND-NELLGHLMLVARSLGAQRAPSG 428
           R +L + F +I P  P H LV P R + R  D   ++ ++L      +A  +  +   + 
Sbjct: 23  RSNLSIGFVNIKPVLPGHVLVSPVRVVKRFVDLTQDEVSDLFISSQRIAGVVEREFGATS 82

Query: 429 WRLVVNNGKDGAQSVYHLHLHVL 497
             + + +G +  QSV H+H+H+L
Sbjct: 83  LTISIQDGPEAGQSVQHVHVHIL 105


>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
          Length = 1595

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 643 QSLSVYIKHDYCATYYHVVCC 705
           Q LS Y+ HDYCAT+    CC
Sbjct: 922 QLLSRYLPHDYCATHLPQNCC 942



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 643 QSLSVYIKHDYCATYYHVVCC 705
           Q LS Y+ H+YCAT+  + CC
Sbjct: 809 QLLSRYLPHNYCATHLPLNCC 829


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +2

Query: 593 LTPF*YKIIIHCFQDETSPSQSTLNMITVQHIIMLFVVLMLSERKT--------NNIHND 748
           LT F  ++I      E +P   + +++TV  ++ +  VL  + R          N +   
Sbjct: 323 LTAFTVQLIQALVPLEQAPRVMSSDLVTVLSLVSIDGVLARTHRHLHAAVLEYLNVLDRT 382

Query: 749 SYKIYVYVTDVCQ 787
           SY++Y Y++D+CQ
Sbjct: 383 SYQVYTYLSDICQ 395


>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
          Length = 260

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 661 IKHDYCATYYHVVCCS 708
           I+ DYC  +YH  CCS
Sbjct: 111 IQRDYCDAWYHTKCCS 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,694,428
Number of Sequences: 59808
Number of extensions: 525416
Number of successful extensions: 1866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)