BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1601 (805 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36) 83 2e-16 SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) 49 4e-06 SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32) 44 2e-04 SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) 31 1.1 SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5 SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 29 4.4 >SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36) Length = 432 Score = 83.4 bits (197), Expect = 2e-16 Identities = 38/73 (52%), Positives = 54/73 (73%), Gaps = 2/73 (2%) Frame = +3 Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQR--APSG 428 DD CLAF DI PQAP H LVIPK+ I +L A+++D +LLG L++VAR + A + A G Sbjct: 24 DDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLLGRLLIVARKVAAMQNLANDG 83 Query: 429 WRLVVNNGKDGAQ 467 +R+++N+GK+G Q Sbjct: 84 YRIIINDGKNGGQ 96 Score = 29.1 bits (62), Expect = 4.4 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +1 Query: 196 GPTIFDKIISKEIRADIIYE 255 G TIF KII KEI A+I++E Sbjct: 4 GDTIFGKIIRKEIPAEILHE 23 >SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) Length = 492 Score = 49.2 bits (112), Expect = 4e-06 Identities = 30/50 (60%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Frame = +1 Query: 115 LSRGSAVAVKRPY--SDEVRRAHETTTTIG-PTIFDKIISKEIRADIIYE 255 L GS K P SDEV +A E T G PTIFDKI+SKEI ADIIYE Sbjct: 34 LLAGSREFCKTPILQSDEVEKAKEAAKTKGEPTIFDKILSKEIPADIIYE 83 >SB_25751| Best HMM Match : HIT (HMM E-Value=2.7e-32) Length = 161 Score = 43.6 bits (98), Expect = 2e-04 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +3 Query: 252 RDDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENND-NELLGHLMLVARSLGAQRAPSG 428 R +L + F +I P P H LV P R + R D ++ ++L +A + + + Sbjct: 23 RSNLSIGFVNIKPVLPGHVLVSPVRVVKRFVDLTQDEVSDLFISSQRIAGVVEREFGATS 82 Query: 429 WRLVVNNGKDGAQSVYHLHLHVL 497 + + +G + QSV H+H+H+L Sbjct: 83 LTISIQDGPEAGQSVQHVHVHIL 105 >SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) Length = 1595 Score = 31.1 bits (67), Expect = 1.1 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 643 QSLSVYIKHDYCATYYHVVCC 705 Q LS Y+ HDYCAT+ CC Sbjct: 922 QLLSRYLPHDYCATHLPQNCC 942 Score = 30.3 bits (65), Expect = 1.9 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 643 QSLSVYIKHDYCATYYHVVCC 705 Q LS Y+ H+YCAT+ + CC Sbjct: 809 QLLSRYLPHNYCATHLPLNCC 829 >SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 885 Score = 29.9 bits (64), Expect = 2.5 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 8/73 (10%) Frame = +2 Query: 593 LTPF*YKIIIHCFQDETSPSQSTLNMITVQHIIMLFVVLMLSERKT--------NNIHND 748 LT F ++I E +P + +++TV ++ + VL + R N + Sbjct: 323 LTAFTVQLIQALVPLEQAPRVMSSDLVTVLSLVSIDGVLARTHRHLHAAVLEYLNVLDRT 382 Query: 749 SYKIYVYVTDVCQ 787 SY++Y Y++D+CQ Sbjct: 383 SYQVYTYLSDICQ 395 >SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) Length = 260 Score = 29.1 bits (62), Expect = 4.4 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +1 Query: 661 IKHDYCATYYHVVCCS 708 I+ DYC +YH CCS Sbjct: 111 IQRDYCDAWYHTKCCS 126 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,694,428 Number of Sequences: 59808 Number of extensions: 525416 Number of successful extensions: 1866 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1859 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2227723674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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