Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1601
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...   116   3e-26
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    42   7e-04
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    42   7e-04
U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    38   0.011
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    31   0.97 
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       31   0.97 
Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    29   3.9  
U42838-1|AAB52492.2|  398|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical pr...    28   9.0  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    28   9.0  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score =  116 bits (278), Expect = 3e-26
 Identities = 54/86 (62%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRA-PSGW 431
           DD  LAF+D++PQAP+HFLVIPKRRI  L++A ++D  L+G LM+ A  +  Q    +G+
Sbjct: 39  DDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSDAALIGKLMVTASKVAKQLGMANGY 98

Query: 432 RLVVNNGKDGAQSVYHLHLHVLGGRQ 509
           R+VVNNGKDGAQSV+HLHLHVLGGRQ
Sbjct: 99  RVVVNNGKDGAQSVFHLHLHVLGGRQ 124


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 273 FNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAP----SGWRLV 440
           F ++ P    H LV PKR + RL D  + +      L +VA+ + A        +   + 
Sbjct: 321 FVNLKPVTDGHVLVSPKRVVPRLTDLTDAET---ADLFIVAKKVQAMLEKHHNVTSTTIC 377

Query: 441 VNNGKDGAQSVYHLHLHVLGGR 506
           V +GKD  Q+V H+H+H+L  R
Sbjct: 378 VQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 273 FNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAP----SGWRLV 440
           F ++ P    H LV PKR + RL D  + +      L +VA+ + A        +   + 
Sbjct: 321 FVNLKPVTDGHVLVSPKRVVPRLTDLTDAET---ADLFIVAKKVQAMLEKHHNVTSTTIC 377

Query: 441 VNNGKDGAQSVYHLHLHVLGGR 506
           V +GKD  Q+V H+H+H+L  R
Sbjct: 378 VQDGKDAGQTVPHVHIHILPRR 399


>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
 Frame = +3

Query: 264 CLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQRAPSGWR--- 434
           C+  NDI P+A  H+LV+ K+ IA+  D    D  LL  +    R L  +          
Sbjct: 31  CVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEEMEKTGRELLREHLKKKGEADT 90

Query: 435 ----LVVNNGKDGAQSVYHLHLHVL 497
               L +        SV+HLH+H++
Sbjct: 91  VEDMLRIGFHLPPLLSVHHLHMHII 115


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 PKELLQDGVLWLTMAKTELKVFIIYTFMFWV-EDNGLATWVSYINCCKLWLKK 564
           PK+ + D  L +++ KT     + +T  FWV     L++W + I CC ++LK+
Sbjct: 488 PKQTIGDSSLIISLIKTCCMCILGWTSGFWVCSTKTLSSWKNAI-CCLVFLKE 539


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 PKELLQDGVLWLTMAKTELKVFIIYTFMFWV-EDNGLATWVSYINCCKLWLKK 564
           PK+ + D  L +++ KT     + +T  FWV     L++W + I CC ++LK+
Sbjct: 488 PKQTIGDSSLIISLIKTCCMCILGWTSGFWVCSTKTLSSWKNAI-CCLVFLKE 539


>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 430 GVLWLTMAKTELKVFIIYTFMFWVEDNGLATWVSYINCCKLWLKKMHKIGCFLLFNPFLI 609
           G    T  KT LK     T   WV  +G+A W  ++    L      K+G     +  +I
Sbjct: 518 GYFLATFTKTRLKFHWSVTIFGWVVASGIAVWCLWVFTKGLLTSNFSKVGWSFFVSWVII 577

Query: 610 *NY 618
            N+
Sbjct: 578 ANH 580


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 626 CFQDETSPSQSTLNMITVQHIIMLFVVLMLSERKTNNIHNDSYKI-YVYVTDVC 784
           CF    + ++  + + T    ++LFV L LS +K  N++ND  K  Y+ + D C
Sbjct: 170 CFLQYWTGNKLIIGLFTCMSSLILFVKL-LSLKKAMNLNNDLSKTNYLCIGDAC 222


>U42838-1|AAB52492.2|  398|Caenorhabditis elegans Hypothetical
           protein T08G2.2 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 493 FWVEDNGLATWVSYINCCKLWL 558
           +W    G  T+++Y+ CCKL L
Sbjct: 253 YWHNSTGYDTYMAYVTCCKLAL 274


>U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical
           protein T07F8.2 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 70  LKFRLKKTYPTNIYDLSRGSAVAVKRPYSDEVRRAHETTTTIGPTIF 210
           L+  +K T  T +  +S    + +++P+  EVRR     T IG +IF
Sbjct: 109 LENSVKITSLTVLSCISIERYITIRKPFCSEVRRQFVNATPIGASIF 155


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 436 LWLTMAKTELKVFIIYTFMFWVEDNGLATWVSYINCCK 549
           L +T+ + ELK FII   +F +    L   VSY+ C K
Sbjct: 256 LLITLDEVELKFFIIVCIIFDLFITPLLIQVSYLGCNK 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,427
Number of Sequences: 27780
Number of extensions: 386806
Number of successful extensions: 929
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)