SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1601
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56490.1 68416.m06282 zinc-binding protein, putative / protei...    88   6e-18
At1g31160.1 68414.m03812 zinc-binding protein, putative / protei...    87   1e-17
At4g16566.1 68417.m02507 histidine triad family protein / HIT fa...    48   6e-06
At5g48545.1 68418.m06002 histidine triad family protein / HIT fa...    48   1e-05
At5g58240.2 68418.m07291 bis(5'-adenosyl)-triphosphatase, putati...    42   6e-04
At5g58240.1 68418.m07292 bis(5'-adenosyl)-triphosphatase, putati...    42   6e-04
At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 / ...    29   3.6  
At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein co...    28   6.3  
At4g00340.1 68417.m00045 S-locus glycoprotein family protein / c...    28   6.3  

>At3g56490.1 68416.m06282 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 147

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRA-PS 425
           DD  LAF DI PQ PVH L+IPK R  +  L  AE    ++LG L+  A+ +  Q     
Sbjct: 54  DDKVLAFRDITPQGPVHILLIPKVRDGLTGLSKAEERHIDILGRLLYTAKLVAKQEGLAE 113

Query: 426 GWRLVVNNGKDGAQSVYHLHLHVLGGRQ 509
           G+R+V+N+G  G QSVYH+H+H++GGRQ
Sbjct: 114 GFRIVINDGPQGCQSVYHIHVHLIGGRQ 141



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 154 SDEVRRAHETTTTIGPTIFDKIISKEIRADIIYE 255
           + E   A   T +  PTIFDKIISKEI + +++E
Sbjct: 20  ASEKEAALAATPSDSPTIFDKIISKEIPSTVVFE 53


>At1g31160.1 68414.m03812 zinc-binding protein, putative / protein
           kinase C inhibitor, putative similar to 14 kDa
           zinc-binding protein (Protein kinase C inhibitor, PKCI)
           [Zea mays] Swiss-Prot:P42856
          Length = 187

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRR--IARLQDAENNDNELLGHLMLVARSLGAQRAP-S 425
           D+  LAF DI PQAPVH LVIPK R  +  L  AE    E+LG L+  ++ +  +     
Sbjct: 94  DENVLAFRDINPQAPVHVLVIPKLRDGLTSLGKAEPRHVEVLGQLLHASKIVAEKEGILD 153

Query: 426 GWRLVVNNGKDGAQSVYHLHLHVLGGRQ 509
           G+R+V+NNG +  QSVYHLHLHVLGGRQ
Sbjct: 154 GFRVVINNGVEACQSVYHLHLHVLGGRQ 181



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 109 YDLSRGSAVAVKRPYSDEV--RRAHETTTTIGPTIFDKIISKEIRADIIYE 255
           Y  S+    + +  +++E   + A     T  PTIFDKII+KEI +DI+YE
Sbjct: 43  YTRSKRLICSTRAAHNEEAAAKAAASVADTGAPTIFDKIIAKEIPSDIVYE 93


>At4g16566.1 68417.m02507 histidine triad family protein / HIT
           family protein contains Pfam domain, PF01230: HIT family
           (histidine triad protein family)
          Length = 146

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNE--LLGHLMLVARSLGAQRAPSG 428
           D+  +AF DI P A  H+LVIPK  I  + D +  D +  L+ H++ V + L  + AP  
Sbjct: 26  DEKVIAFQDIKPAAQRHYLVIPKEHIPTVNDLQRRDEDYSLVRHMLSVGQQLLQKDAPQS 85

Query: 429 WRLVVNNGKDGAQSVYHLHLH 491
                   +    SV HLHLH
Sbjct: 86  IHR-FGFHQPPFNSVDHLHLH 105


>At5g48545.1 68418.m06002 histidine triad family protein / HIT
           family protein contains Pfam profile PF01230:HIT domain;
           contains Prosite motif PS00892: HIT family signature.
          Length = 197

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 DDLCLAFNDIAPQAPVHFLVIPKRRIARLQDAENND-NELLGHLMLVARSLGAQRAPSGW 431
           DD+CL   D  P +  H L+IPK     L++   +    +   + L++ ++        +
Sbjct: 68  DDMCLCILDTNPLSHGHSLIIPKLHYPTLEETPPSVVAAMCSKVPLISNAIVKATGSDSF 127

Query: 432 RLVVNNGKDGAQSVYHLHLHVL 497
            L+VNNG    Q ++H H+H++
Sbjct: 128 NLLVNNGAAAGQVIFHTHIHII 149


>At5g58240.2 68418.m07291 bis(5'-adenosyl)-triphosphatase, putative
           similar to bis(5'-adenosyl)-triphosphatase (Diadenosine
           5',5'''- P1,P3-triphosphate hydrolase,
           Dinucleosidetriphosphatase, AP3A hydrolase, AP3AASE,
           Fragile histidine triad protein) [Homo sapiens]
           Swiss-Prot:P49789
          Length = 160

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = +3

Query: 261 LCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ----RAPSG 428
           L  A  ++ P  P H LV P+R + R  D   ++      L L A+ +G++       S 
Sbjct: 26  LSYAMVNLRPLLPAHVLVCPRRLVPRFTDLTADETS---DLWLTAQKVGSKLETFHNASS 82

Query: 429 WRLVVNNGKDGAQSVYHLHLHVL 497
             L + +G    Q+V H+H+H+L
Sbjct: 83  LTLAIQDGPQAGQTVPHVHIHIL 105


>At5g58240.1 68418.m07292 bis(5'-adenosyl)-triphosphatase, putative
           similar to bis(5'-adenosyl)-triphosphatase (Diadenosine
           5',5'''- P1,P3-triphosphate hydrolase,
           Dinucleosidetriphosphatase, AP3A hydrolase, AP3AASE,
           Fragile histidine triad protein) [Homo sapiens]
           Swiss-Prot:P49789
          Length = 180

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = +3

Query: 261 LCLAFNDIAPQAPVHFLVIPKRRIARLQDAENNDNELLGHLMLVARSLGAQ----RAPSG 428
           L  A  ++ P  P H LV P+R + R  D   ++      L L A+ +G++       S 
Sbjct: 46  LSYAMVNLRPLLPAHVLVCPRRLVPRFTDLTADETS---DLWLTAQKVGSKLETFHNASS 102

Query: 429 WRLVVNNGKDGAQSVYHLHLHVL 497
             L + +G    Q+V H+H+H+L
Sbjct: 103 LTLAIQDGPQAGQTVPHVHIHIL 125


>At4g24040.1 68417.m03454 glycosyl hydrolase family protein 37 /
           trehalase, putative similar to trehalase 1 GMTRE1
           GI:4559292 from [Glycine max]
          Length = 626

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   YDYNGVYLLVSTKMFNKVFQRALKFRLKKTYPTNIY 111
           Y  N   LL+ST   NK+F  +  F L  ++P+ IY
Sbjct: 4   YKLNNPNLLISTHTHNKLFLSSSPFNLLFSFPSFIY 39


>At4g20070.1 68417.m02936 peptidase M20/M25/M40 family protein
           contains similarity to hydantoin utilization protein C
           [Pseudomonas sp.] SWISS-PROT:Q01264; contains Pfam
           profile PF01546: Peptidase family M20/M25/M40
          Length = 525

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 496 WVEDNGLATWVSYI 537
           W+ED GL+TWV Y+
Sbjct: 132 WMEDAGLSTWVDYM 145


>At4g00340.1 68417.m00045 S-locus glycoprotein family protein /
           curculin-like (mannose-binding) lectin family protein /
           PAN domain-containing protein contains Pfam profiles:
           PF01453 lectin (probable mannose binding), PF00954
           S-locus glycoprotein family, PF00024 PAN domain
          Length = 402

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 421 LQDGVLWLTMAK---TELKVFIIYTFMFWVEDNGLATWVSYINCCKLWLKKMHKIG 579
           L+DGV+W T  K   T+ + F     +  + D+G   W S+ N    WL  M+  G
Sbjct: 99  LRDGVVWQTDNKQPGTDFR-FSETGNLILINDDGSPVWQSFDNPTDTWLPGMNVTG 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,923,981
Number of Sequences: 28952
Number of extensions: 348154
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -