Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1597
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 93 1e-19
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 93 2e-19
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 93 2e-19
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 86 2e-17
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 55 4e-08
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 46 2e-05
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 45 4e-05
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 45 4e-05
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 45 5e-05
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 45 5e-05
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 45 5e-05
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 45 5e-05
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 44 8e-05
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 44 8e-05
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 42 4e-04
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 41 8e-04
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 41 8e-04
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 40 0.001
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 40 0.001
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 40 0.001
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 40 0.001
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 40 0.002
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 40 0.002
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 40 0.002
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 40 0.002
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 40 0.002
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 39 0.002
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 39 0.002
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 39 0.003
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 38 0.004
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 38 0.005
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 38 0.005
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 38 0.005
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 38 0.005
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 38 0.005
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 38 0.005
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 38 0.005
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 38 0.007
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 38 0.007
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 38 0.007
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 38 0.007
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 37 0.010
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 37 0.010
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 37 0.010
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 37 0.013
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 36 0.017
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 36 0.017
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 36 0.029
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 36 0.029
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 35 0.038
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 35 0.051
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 35 0.051
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 34 0.067
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 34 0.067
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 34 0.067
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 34 0.067
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 34 0.067
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 34 0.067
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 34 0.067
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 34 0.089
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 34 0.089
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 34 0.089
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 34 0.089
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 34 0.089
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 33 0.12
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 33 0.12
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 33 0.12
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 33 0.12
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 33 0.12
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 33 0.12
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 33 0.12
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 33 0.12
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 33 0.12
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 33 0.12
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 33 0.16
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 33 0.16
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.16
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 33 0.16
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 33 0.21
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 33 0.21
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 33 0.21
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 33 0.21
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 33 0.21
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 33 0.21
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 33 0.21
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 33 0.21
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 33 0.21
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 33 0.21
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 33 0.21
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 32 0.27
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 32 0.27
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 32 0.27
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 32 0.27
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 32 0.36
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 32 0.36
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 32 0.36
At3g04470.1 68416.m00474 expressed protein 31 0.47
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 31 0.63
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 31 0.63
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 31 0.63
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 0.83
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 31 0.83
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 31 0.83
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 31 0.83
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 31 0.83
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea... 30 1.1
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 30 1.1
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 30 1.1
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 30 1.1
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 30 1.1
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 30 1.1
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 30 1.4
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 30 1.4
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 30 1.4
At3g17540.1 68416.m02240 F-box family protein similar to hypothe... 30 1.4
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 1.4
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 30 1.4
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 30 1.4
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 30 1.4
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 29 1.9
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 29 1.9
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 29 1.9
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 29 1.9
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 1.9
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 29 1.9
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 29 1.9
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa... 29 1.9
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 29 1.9
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 29 1.9
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 29 2.5
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 29 2.5
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 2.5
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 3.3
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 29 3.3
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 29 3.3
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 28 4.4
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 28 4.4
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 28 4.4
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 28 4.4
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 4.4
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain... 28 4.4
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains... 28 4.4
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 28 4.4
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 28 5.8
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 28 5.8
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 5.8
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 5.8
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 28 5.8
At1g04780.1 68414.m00474 ankyrin repeat family protein contains ... 28 5.8
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 27 7.7
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 27 7.7
At3g42723.1 68416.m04459 hypothetical protein 27 7.7
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 27 7.7
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 27 7.7
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 27 7.7
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 27 7.7
At1g26330.1 68414.m03211 hypothetical protein 27 7.7
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 27 7.7
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 27 7.7
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +1
Query: 298 RRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVE 477
+R +KLQEF+AH ANVNCL++G K++++ TGGDD KVNLWAIG+ + LMSL GHT+ V+
Sbjct: 3 KRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSAVD 62
Query: 478 CVCFGHSEDL 507
V F +E L
Sbjct: 63 SVAFDSAEVL 72
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 486 FWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
F S L AG+ +G +K+WD+E AK++R FTGH+ ++FHP+G
Sbjct: 66 FDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFG 112
Score = 44.0 bits (99), Expect = 8e-05
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+G +K+WDL A KLL F H+G I+ +DFHP
Sbjct: 159 SGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHP 194
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/82 (20%), Positives = 42/82 (51%)
Frame = +1
Query: 244 EILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWA 423
E+L+ + ++ +I + + ++ F H++N + + H + LA+G D + +W
Sbjct: 70 EVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEF-HPFGEFLASGSSDANLKIWD 128
Query: 424 IGRQSCLMSLSGHTTPVECVCF 489
I ++ C+ + GH+ + + F
Sbjct: 129 IRKKGCIQTYKGHSRGISTIRF 150
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 471 CRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
C F F +GS LKIWD+ ++T+ GH I + F P G
Sbjct: 103 CSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDG 154
Score = 34.7 bits (76), Expect = 0.051
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 435 KLFNES*WTYNPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
KL +E + P R F L GS +K WDLE +L+ + ++ + F
Sbjct: 175 KLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKF 234
Query: 615 HPYG 626
HP G
Sbjct: 235 HPDG 238
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/71 (57%), Positives = 56/71 (78%)
Frame = +1
Query: 295 TRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
T+R++KLQEFVAH A VNCL +G KS++VL TGG+D KVNLWAIG+ + ++SL GH++ +
Sbjct: 3 TKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 475 ECVCFGHSEDL 507
+ V F SE L
Sbjct: 63 DSVTFDASEVL 73
Score = 54.4 bits (125), Expect = 6e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L AG+ +G +K+WDLE AK++RT TGH+ +DFHP+G
Sbjct: 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+G + +K+WDL A KLL F H+G I+ +DFHP+
Sbjct: 160 SGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPH 196
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 346 NCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
NC+++ H + A+G D + +W I ++ C+ + GHT V + F
Sbjct: 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 471 CRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
C F F +GS LKIWD+ + T+ GH + + F P G
Sbjct: 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 155
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF +H+ + L H +LATG D+ V W + + S T V C+ F
Sbjct: 178 LTEFKSHEGQIQSLDF-HPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSF- 235
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+ + VL K W+ + C
Sbjct: 236 NPDGKTVLCGLQESLKIFSWEPIRC 260
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L GS +K WDLE +L+ + ++C+ F+P G
Sbjct: 199 LLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/71 (57%), Positives = 56/71 (78%)
Frame = +1
Query: 295 TRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
T+R++KLQEFVAH A VNCL +G KS++VL TGG+D KVNLWAIG+ + ++SL GH++ +
Sbjct: 3 TKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGI 62
Query: 475 ECVCFGHSEDL 507
+ V F SE L
Sbjct: 63 DSVTFDASEVL 73
Score = 54.4 bits (125), Expect = 6e-08
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L AG+ +G +K+WDLE AK++RT TGH+ +DFHP+G
Sbjct: 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+G + +K+WDL A KLL F H+G I+ +DFHP+
Sbjct: 160 SGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPH 196
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 346 NCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
NC+++ H + A+G D + +W I ++ C+ + GHT V + F
Sbjct: 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 151
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 471 CRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
C F F +GS LKIWD+ + T+ GH + + F P G
Sbjct: 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 155
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF +H+ + L H +LATG D+ V W + + S T V C+ F
Sbjct: 178 LTEFKSHEGQIQSLDF-HPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSF- 235
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+ + VL K W+ + C
Sbjct: 236 NPDGKTVLCGLQESLKIFSWEPIRC 260
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L GS +K WDLE +L+ + ++C+ F+P G
Sbjct: 199 LLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDG 239
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 86.2 bits (204), Expect = 2e-17
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 20/127 (15%)
Frame = +1
Query: 187 YSQILFINIVTQTL---IVLKLEILLWSSRNNL-------LITMEATRRSWKLQ------ 318
YS+ILF+N+ + + +V L + W NL ++ T+R++KL+
Sbjct: 40 YSKILFLNLHSFPIDLNLVSVLRLAFWVLLKNLDGRRCKGFVSAMNTKRAYKLRILFSLI 99
Query: 319 ----EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVC 486
EFVAH A VNCL +G KS++VL TGG+D KVNLWAIG+ + ++SL GH++ ++ V
Sbjct: 100 SSFREFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVT 159
Query: 487 FGHSEDL 507
F SE L
Sbjct: 160 FDASEGL 166
Score = 52.4 bits (120), Expect = 2e-07
Identities = 20/41 (48%), Positives = 30/41 (73%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L AG+ +G +K+WDLE AK++RT TGH+ ++FHP+G
Sbjct: 166 LVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFG 206
Score = 47.2 bits (107), Expect = 9e-06
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+G + +K+WDL A KLL F H+G I+ +DFHP+
Sbjct: 253 SGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPH 289
Score = 36.7 bits (81), Expect = 0.013
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF +H+ + L H +LATG DK V W + + S TT V C+ F
Sbjct: 271 LHEFKSHEGKIQSLDF-HPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTF- 328
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+ + VL K W+ + C
Sbjct: 329 NPDGKSVLCGLQESLKIFSWEPIRC 353
Score = 33.9 bits (74), Expect = 0.089
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 346 NCLAMG-HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
NC+++ H + A+G D + +W I ++ C+ + GHT V + F
Sbjct: 196 NCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRF 244
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 471 CRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
C F F +GS LKIWD+ + T+ GH + + F P G
Sbjct: 197 CVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDG 248
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L GS +K WDLE +L+ + ++C+ F+P G
Sbjct: 292 LLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDG 332
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +3
Query: 465 NPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+P F S L AG+ +G +K+WDLE +K++R FTGH+ ++FHP+G
Sbjct: 8 SPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFG 61
Score = 44.0 bits (99), Expect = 8e-05
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+G +K+WDL A KLL F H+G I+ +DFHP
Sbjct: 108 SGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHP 143
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/82 (21%), Positives = 41/82 (50%)
Frame = +1
Query: 244 EILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWA 423
E+L+ + ++ +I + S ++ F H++N + + H + LA+G D + +W
Sbjct: 19 EVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEF-HPFGEFLASGSSDTNLRVWD 77
Query: 424 IGRQSCLMSLSGHTTPVECVCF 489
++ C+ + GHT + + F
Sbjct: 78 TRKKGCIQTYKGHTRGISTIEF 99
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 471 CRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
C F F +GS L++WD ++T+ GH I ++F P G
Sbjct: 52 CSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDG 103
Score = 35.1 bits (77), Expect = 0.038
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +3
Query: 435 KLFNES*WTYNPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
KL +E P R F L GS +K WDLE +L+ T ++ + F
Sbjct: 124 KLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAIAF 183
Query: 615 HPYG 626
HP G
Sbjct: 184 HPDG 187
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 445 MSLSGHTTPVECVCFGHSEDLDVL 516
MSL GHT+PV+ V F +SE++ VL
Sbjct: 1 MSLCGHTSPVDSVAF-NSEEVLVL 23
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
F HK + LA ++ATGG D K LW IG L GH V C+ F +
Sbjct: 66 FTGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDG 125
Query: 502 DL 507
L
Sbjct: 126 QL 127
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
AGS+ +L +W+ + L F+GH + C DF P G
Sbjct: 172 AGSEDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDG 209
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 498
H + CL + S+ ++ G D V++ I + SL+ HT VECV F S
Sbjct: 241 HTEGLTCLDINSNSSLAIS-GSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPS 295
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 483
E HK +V+CLA + Q+LA+GG D V ++ + L G +E V
Sbjct: 108 ELPGHKDSVSCLAFSY-DGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWV 161
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
L +GS+ G++ I ++ K++ + H +++C+ F P
Sbjct: 256 LAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSP 294
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
E AH NVN LA + Q+ + T G+DK + +W + L + GH PV VC
Sbjct: 459 EIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQ 518
Query: 496 SEDLDVLVHKLVP*KFGIW 552
E++ + V K W
Sbjct: 519 KENIQFIFSTAVDGKIKAW 537
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
F+A LA + N ++A G DD + ++ + L GH V + F S
Sbjct: 882 FMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAF--SN 939
Query: 502 DLDVLVHKLVP*KFGIWKL 558
L+VLV + +W +
Sbjct: 940 VLNVLVSSGADSQLCVWSM 958
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
E AH NVN LA + Q+ + T G+DK + +W + L + GH PV VC
Sbjct: 459 EIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQ 518
Query: 496 SEDLDVLVHKLVP*KFGIW 552
E++ + V K W
Sbjct: 519 KENIQFIFSTAVDGKIKAW 537
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
F+A LA + N ++A G DD + ++ + L GH V + F S
Sbjct: 882 FMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAF--SN 939
Query: 502 DLDVLVHKLVP*KFGIWKL 558
L+VLV + +W +
Sbjct: 940 VLNVLVSSGADSQLCVWSM 958
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF H E
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCF-HPE 240
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKL-QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 435
SS +++LI + W Q F H V + K A+ D+ + +W +G
Sbjct: 116 SSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSP 175
Query: 436 SCLMSLSGHTTPVECVCFGHSEDLDVLV 519
+L H V CV + D L+
Sbjct: 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLI 203
Score = 31.1 bits (67), Expect = 0.63
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS K+WD + ++T GH + + FHP
Sbjct: 205 GSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF H E
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCF-HPE 240
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKL-QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 435
SS +++LI + W Q F H V + K A+ D+ + +W +G
Sbjct: 116 SSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSP 175
Query: 436 SCLMSLSGHTTPVECVCFGHSEDLDVLV 519
+L H V CV + D L+
Sbjct: 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLI 203
Score = 31.1 bits (67), Expect = 0.63
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS K+WD + ++T GH + + FHP
Sbjct: 205 GSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF H E
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCF-HPE 240
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKL-QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 435
SS +++LI + W Q F H V + K A+ D+ + +W +G
Sbjct: 116 SSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSP 175
Query: 436 SCLMSLSGHTTPVECVCFGHSEDLDVLV 519
+L H V CV + D L+
Sbjct: 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLI 203
Score = 31.1 bits (67), Expect = 0.63
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS K+WD + ++T GH + + FHP
Sbjct: 205 GSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHP 239
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
AH+ VNC+ ++ L TG DD +W +SC+ +L GHT V VCF H E
Sbjct: 183 AHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCF-HPE 240
Score = 34.7 bits (76), Expect = 0.051
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKL-QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 435
SS +++LI + + W Q F H V + K A+ D+ + +W +G
Sbjct: 116 SSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175
Query: 436 SCLMSLSGHTTPVECVCFGHSEDLDVLV 519
+L H V CV + D L+
Sbjct: 176 DPNFTLDAHQKGVNCVDYFTGGDKPYLI 203
Score = 31.1 bits (67), Expect = 0.63
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS K+WD + ++T GH + + FHP
Sbjct: 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHP 239
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 423 NWKTKLFNES*W-TYNPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAI 599
N++T++ +S T P R F + ++ AG+ +++++ ++ F H I
Sbjct: 43 NYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYI 102
Query: 600 KCMDFHP 620
+C+ HP
Sbjct: 103 RCVAVHP 109
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 307 WKLQEFV----AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
W+ + ++ H +VNC+ S Q+LATG DD KV +W + +C ++ + HT V
Sbjct: 336 WRTETYILKQQGHYFDVNCVTYSPDS-QLLATGADDNKVKVWNVMSGTCFITFTEHTNAV 394
Query: 475 ECVCF 489
+ F
Sbjct: 395 TALHF 399
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 480 CVFWS-FRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
CV +S +L G+ +K+W++ + TFT H A+ + F
Sbjct: 354 CVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHF 399
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +1
Query: 307 WKLQEFV----AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
W+ + ++ H +VNC+ S Q+LATG DD KV +W + +C ++ + HT V
Sbjct: 376 WRTETYILKQQGHYFDVNCVTYSPDS-QLLATGADDNKVKVWNVMSGTCFITFTEHTNAV 434
Query: 475 ECVCF 489
+ F
Sbjct: 435 TALHF 439
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 480 CVFWS-FRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
CV +S +L G+ +K+W++ + TFT H A+ + F
Sbjct: 394 CVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHF 439
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 298 RRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSL-SGHTTPV 474
RR + QE H+ VN LA + + +L +G DD ++N+W + L S+ +GHT +
Sbjct: 38 RRLSQEQELEGHQGCVNALAW-NSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANI 96
Query: 475 ECVCF 489
C F
Sbjct: 97 FCTKF 101
Score = 32.7 bits (71), Expect = 0.21
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+GS G IW+ + +L++ G + + C+ HP+
Sbjct: 638 SGSDDGRWFIWEKQTGRLMKVLVGDESVLNCIQCHPF 674
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
+H +V LA + +LA+ DKKV +W + +C +++ HT V+ V + H
Sbjct: 263 SHTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNH 318
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
+H +V LA + +LA+ DKKV +W + +C +++ HT V+ V + H
Sbjct: 231 SHTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNH 286
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT-TPVECVCF 489
L H V C A+G Q+L +G DK + +W + C+M+L HT T +C+
Sbjct: 251 LTSLEGHSGEVTCFAVG---GQMLYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLLCW 307
Query: 490 GH---SEDLDVLVHKLVP*KFGIWKLLNC*EHSQGTKEPLS 603
S LD + + GI K++ Q + LS
Sbjct: 308 DKCLISSSLDGTIKVWAYSENGILKVVQTRRQEQSSVHALS 348
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +1
Query: 208 NIVTQTLIVLKLEILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLA 387
N VT + + I+ S + L+ E ++RS+ HK+ V CL + + +L
Sbjct: 325 NAVTALAVKSQSSIVYCGSSDGLVNYWERSKRSFTGGILKGHKSAVLCLGI---AGNLLL 381
Query: 388 TGGDDKKVNLW----AIGRQSCLMSLSGHTTPVECV 483
+G DK + +W + CL L+GH PV+C+
Sbjct: 382 SGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCL 417
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
++ + H + V CLA+ H + VL TGG D +W I + + +LSGH V C F
Sbjct: 253 IRSYHGHLSGVYCLAL-HPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTV-CSVFT 310
Query: 493 HSEDLDVL 516
D V+
Sbjct: 311 RPTDPQVV 318
Score = 37.1 bits (82), Expect = 0.010
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS +K WDL K + T T HK +++ M HP
Sbjct: 320 GSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHP 354
Score = 36.3 bits (80), Expect = 0.017
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+K WDLE K++R++ GH + C+ HP
Sbjct: 242 VKCWDLEQNKVIRSYHGHLSGVYCLALHP 270
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLD 510
H V LA+ ++ + + G DDK+V W + + + S GH + V C+ LD
Sbjct: 217 HIEQVRGLAVSNRHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLSGVYCLAL--HPTLD 273
Query: 511 VLV 519
VL+
Sbjct: 274 VLL 276
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAAKLLRTFTGH 587
C GS +KIWD+ L T TGH
Sbjct: 192 CTGSADRTIKIWDVATGVLKLTLTGH 217
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
H S + +GGDD K+ +W CL +L GH + V F H
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHH 103
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDV 513
H + + DD+ + +W ++C+ L+GH V C F EDL V
Sbjct: 102 HHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVV 151
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC--LMSLSGHTTPVECVCFGHSED 504
H VN A H + ++ +G DD++V LW + + +L GH V V F +D
Sbjct: 203 HDRGVNWAAF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQD 261
Query: 505 LDV 513
+ V
Sbjct: 262 IIV 264
Score = 30.7 bits (66), Expect = 0.83
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+ S ++IW+ ++ + TGH + C FHP
Sbjct: 110 SASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHP 145
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFH 617
A +G +++WD L+ F H+G ++ + FH
Sbjct: 26 ASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH 60
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 468 PCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFH 617
P R F + + L +G +K+W+ + + L T GH I+ + FH
Sbjct: 53 PVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFH 102
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/50 (20%), Positives = 26/50 (52%)
Frame = +1
Query: 301 RSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 450
++W++ H NV+ + M H ++ + +DK + +W +++ L +
Sbjct: 237 KAWEVDTLRGHMNNVSSV-MFHAKQDIIVSNSEDKSIRVWDATKRTGLQT 285
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ--SCLMSLSGHTTPVECV 483
H +V CLA+ + +L +G DK V LW + SCL L GH PV+C+
Sbjct: 304 HTESVLCLAV---VSDILCSGSADKTVRLWKCSAKDYSCLAMLEGHLGPVKCL 353
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
H S + +GGDD K+ +W CL +L GH + V F H
Sbjct: 60 HNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHH 103
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDV 513
H N + + DD+ + +W ++C+ L+GH V C F EDL V
Sbjct: 102 HHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVV 151
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC--LMSLSGHTTPVECVCFGHSED 504
H VN + H + ++ +G DD++V LW + + +L GH V V F +D
Sbjct: 203 HDRGVNWASF-HPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQD 261
Query: 505 LDV 513
+ V
Sbjct: 262 IIV 264
Score = 31.1 bits (67), Expect = 0.63
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+ S ++IW+ ++ + TGH + C FHP
Sbjct: 110 SASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHP 145
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFH 617
A +G +++WD L+ F H+G ++ + FH
Sbjct: 26 ASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFH 60
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 468 PCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFH 617
P R F + + L +G +K+W+ + + L T GH I+ + FH
Sbjct: 53 PVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFH 102
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +1
Query: 301 RSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
++W++ H NV+ + M H ++ + +DK + +W
Sbjct: 237 KAWEVDTLRGHMNNVSSV-MFHAKQDIIVSNSEDKSIRVW 275
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
E AH VN +A + Q+ + T GDDK + +W + GH PV +C +
Sbjct: 457 EIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHY 516
Query: 496 SEDLDVLVHKLVP*KFGIW 552
E++ + + K W
Sbjct: 517 KENIQFIFSTALDGKIKAW 535
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLV 531
LA + N ++A G DD + ++ + L GH+ + + F S L+VLV
Sbjct: 871 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF--SNVLNVLVSSGA 928
Query: 532 P*KFGIW 552
+ +W
Sbjct: 929 DAQLCVW 935
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
E AH VN +A + Q+ + T GDDK + +W + GH PV +C +
Sbjct: 457 EIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHY 516
Query: 496 SEDLDVLVHKLVP*KFGIW 552
E++ + + K W
Sbjct: 517 KENIQFIFSTALDGKIKAW 535
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLV 531
LA + N ++A G DD + ++ + L GH+ + + F S L+VLV
Sbjct: 871 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF--SNVLNVLVSSGA 928
Query: 532 P*KFGIW 552
+ +W
Sbjct: 929 DAQLCVW 935
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
AH VNC+ ++ L TG DD +W +SC+ +L GHT V V F H E
Sbjct: 183 AHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSF-HPE 240
Score = 34.3 bits (75), Expect = 0.067
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKL-QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 435
SS +++LI + + W Q F H V + K A+ D+ + +W +G
Sbjct: 116 SSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSP 175
Query: 436 SCLMSLSGHTTPVECVCFGHSEDLDVLV 519
+L H V CV + D L+
Sbjct: 176 DPNFTLDAHLKGVNCVDYFTGGDKPYLI 203
Score = 32.3 bits (70), Expect = 0.27
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS K+WD + ++T GH + + FHP
Sbjct: 205 GSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHP 239
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 39.1 bits (87), Expect = 0.002
Identities = 28/81 (34%), Positives = 37/81 (45%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
F H +V L + +Q+L + DK V LW I QSCL L H V CV F +
Sbjct: 515 FTGHLDDV--LDLSWSRSQLLLSSSMDKTVRLWDIETQSCL-KLFAHNDYVTCVQF-NPL 570
Query: 502 DLDVLVHKLVP*KFGIWKLLN 564
D D + + K IW + N
Sbjct: 571 DEDYFISGSLDAKIRIWNISN 591
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 489 WSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
WS +L + S +++WD+E L+ F H + C+ F+P
Sbjct: 527 WSRSQLLLSSSMDKTVRLWDIETQSCLKLF-AHNDYVTCVQFNP 569
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +1
Query: 250 LLWSSRNNLLIT--MEATRRSWKLQ-----EFVAHKANVNCLAMGHKSNQVLATGGDDKK 408
L WS R+ LL++ M+ T R W ++ + AH V C+ +G D K
Sbjct: 525 LSWS-RSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDYVTCVQFNPLDEDYFISGSLDAK 583
Query: 409 VNLWAIGRQSCLMSLSGHTTPVECVCF 489
+ +W I + ++ + V VC+
Sbjct: 584 IRIWNISNRQ-VVEWNDLKEMVTAVCY 609
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 316 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC-LMSLS-GHTTPV 474
QE AH+ + + S+ +LA+ G+D +++W + Q C +MS++ G TP+
Sbjct: 405 QEIQAHQGGIWTMKFSPDSH-LLASAGEDCAIHVWEV--QECEIMSMNEGSLTPI 456
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
+QEF H+ ++ +A + + + + DDK + LW + S + +L GHT CV F
Sbjct: 64 VQEFTGHENGISDVAFSSDA-RFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFN 122
Query: 493 HSEDLDV 513
++ V
Sbjct: 123 PQSNMIV 129
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 486 FWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
F S R + S LK+WD+E L++T GH C++F+P
Sbjct: 79 FSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNP 123
Score = 35.9 bits (79), Expect = 0.022
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
++ + H C+ +SN +++ G D+ V +W + CL L H+ PV V F
Sbjct: 106 IKTLIGHTNYAFCVNFNPQSNMIVS-GSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFN 164
Query: 493 HSEDLDV 513
L V
Sbjct: 165 RDGSLIV 171
Score = 34.7 bits (76), Expect = 0.051
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCM 608
G+ L++W++ +AK L+T+TGH A C+
Sbjct: 216 GTLDNTLRLWNISSAKFLKTYTGHVNAQYCI 246
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +1
Query: 274 LLITMEATRRSWK------LQEFVAHKANVNCL--AMGHKSNQVLATGGDDKKVNLWAIG 429
L+ T++ T R W L+ + H C+ A + + + +G +D V++W +
Sbjct: 214 LVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELN 273
Query: 430 RQSCLMSLSGHTTPVECVCFGHSEDL 507
+ L L GHT V V +E+L
Sbjct: 274 SKKLLQKLEGHTETVMNVACHPTENL 299
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+GS+ + +W+L + KLL+ GH + + HP
Sbjct: 260 SGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHP 295
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+GS ++IWD+ K L+ H + +DF+ G
Sbjct: 130 SGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDG 167
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 352 LAMGHKSN-QVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
LA+ S+ + LATGG D+ V++W + + + + GH V C+CF
Sbjct: 226 LALAVSSDGRYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCF 272
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 501 RLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
R G + IWD+ + ++ F GH+ + C+ F YG
Sbjct: 235 RYLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFR-YG 275
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
IL SR+ ++ + +S + + V HK+ V L H + LA+GG+D ++ +W
Sbjct: 269 ILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNN 327
Query: 427 GRQSCLMSLSGHTTPVECVCFG-HSEDL 507
Q ++ L+ HT V+ + + H L
Sbjct: 328 HSQQPILKLTEHTAAVKAITWSPHQSSL 355
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 274 LLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS-CLMS 450
L+ + + S +Q VAH VNCLA + V+ATG DK V L+ + + S L +
Sbjct: 253 LIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHT 312
Query: 451 LSGHTTPV 474
H V
Sbjct: 313 FDSHKEEV 320
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 316 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC---LMSLSGHTTPVECVC 486
Q F AH+ V +A + + + GDD+ + +W + S + S+ H+ V C+
Sbjct: 221 QIFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLA 280
Query: 487 F 489
F
Sbjct: 281 F 281
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/85 (29%), Positives = 35/85 (41%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF+ H ++ L + N L + D V LW IG + CL + H V V F
Sbjct: 349 LHEFLGHSGDI--LDISWSKNNRLLSASVDNSVRLWQIGCEDCL-GIFSHNNYVTSVQFN 405
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+D D + + K IW C
Sbjct: 406 PVDD-DHFISGSIDGKVRIWSASQC 429
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/85 (29%), Positives = 35/85 (41%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF+ H ++ L + N L + D V LW IG + CL + H V V F
Sbjct: 349 LHEFLGHSGDI--LDISWSKNNRLLSASVDNSVRLWQIGCEDCL-GIFSHNNYVTSVQFN 405
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+D D + + K IW C
Sbjct: 406 PVDD-DHFISGSIDGKVRIWSASQC 429
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF H + L+ K L + D+ V LW +G CL + + H V CV F
Sbjct: 315 LHEFKGHIGEILDLSWSEKG--YLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFN 371
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+D + + + K IW + C
Sbjct: 372 PVDD-NYFISGSIDGKVRIWDVTRC 395
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 489 WSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
WS + + S +++W + + LRTFT H + C+ F+P
Sbjct: 330 WSEKGYLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNP 372
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +1
Query: 250 LLWSSRNNLLIT-MEATRRSWK------LQEFVAHKANVNCLAMGHKSNQVLATGGDDKK 408
L WS + LL + ++ T R W+ L+ F H V C+A + +G D K
Sbjct: 328 LSWSEKGYLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGK 386
Query: 409 VNLWAIGR 432
V +W + R
Sbjct: 387 VRIWDVTR 394
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF H + L+ K L + D+ V LW +G CL + + H V CV F
Sbjct: 315 LHEFKGHIGEILDLSWSEKG--YLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFN 371
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+D + + + K IW + C
Sbjct: 372 PVDD-NYFISGSIDGKVRIWDVTRC 395
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 489 WSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
WS + + S +++W + + LRTFT H + C+ F+P
Sbjct: 330 WSEKGYLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNP 372
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +1
Query: 250 LLWSSRNNLLIT-MEATRRSWK------LQEFVAHKANVNCLAMGHKSNQVLATGGDDKK 408
L WS + LL + ++ T R W+ L+ F H V C+A + +G D K
Sbjct: 328 LSWSEKGYLLSSSVDETVRLWRVGCDECLRTFT-HNNFVTCVAFNPVDDNYFISGSIDGK 386
Query: 409 VNLWAIGR 432
V +W + R
Sbjct: 387 VRIWDVTR 394
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
E AH VN ++ + Q+ + T GDDK + +W + GH PV VC +
Sbjct: 457 EIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHY 516
Query: 496 SEDLDVLVHKLVP*KFGIW 552
E++ + + K W
Sbjct: 517 KENIQFIFSTALDGKIKAW 535
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLV 531
LA + N ++A G DD + ++ + L GH+ + + F S L+VLV
Sbjct: 882 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF--SNVLNVLVSSGA 939
Query: 532 P*KFGIW 552
+ +W
Sbjct: 940 DAQLCVW 946
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQV-LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
E AH VN ++ + Q+ + T GDDK + +W + GH PV VC +
Sbjct: 457 EIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHY 516
Query: 496 SEDLDVLVHKLVP*KFGIW 552
E++ + + K W
Sbjct: 517 KENIQFIFSTALDGKIKAW 535
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLV 531
LA + N ++A G DD + ++ + L GH+ + + F S L+VLV
Sbjct: 882 LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF--SNVLNVLVSSGA 939
Query: 532 P*KFGIW 552
+ +W
Sbjct: 940 DAQLCVW 946
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 477 MCVFWSFRRLRCA----GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+CV WS LRC+ G TG ++ WD E LL + HKG + + P
Sbjct: 249 ICV-WSLLSLRCSVLVSGDSTGTVQFWDSEHGTLLEAHSNHKGDVNTLAAAP 299
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS +K WDL K + T T HK ++ M HP
Sbjct: 313 GSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHP 347
Score = 35.5 bits (78), Expect = 0.029
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+K WDLE K++R++ GH + C+ HP
Sbjct: 236 VKCWDLEQNKVIRSYHGHLHGVYCLALHP 264
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAAKLLRTFTGHKGAIK 602
C GS +KIWD+ L T TGH G ++
Sbjct: 186 CTGSADRTIKIWDVATGVLKLTLTGHIGQVR 216
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 507
H V LA+ ++ + + G DDK+V W + + + S GH V C+ + D+
Sbjct: 211 HIGQVRGLAVSNRHTYMFSAG-DDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDV 268
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
++ + H V CLA+ H + V+ TGG D +W I
Sbjct: 247 IRSYHGHLHGVYCLAL-HPTLDVVLTGGRDSVCRVWDI 283
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 37.5 bits (83), Expect = 0.007
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +1
Query: 289 EATRRSWKLQEFVAHKANVNCLAMG----HKSNQVLATGGDDKKVNLW---AIGRQSCLM 447
+ T W+ Q+++ HK ++ M + +L +GG DK + +W G +CL
Sbjct: 355 DGTVNFWERQKYLTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCLS 414
Query: 448 SLSGHTTPVECV 483
L H PV+C+
Sbjct: 415 VLMDHEGPVKCL 426
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 286 MEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT 465
+E RR L+ + H V+CL++ +L +G DK + +W + CL S+ H
Sbjct: 231 VEVRRRKNVLK--IRHFDAVSCLSLNEDLG-LLYSGSWDKTLKVWRLSDSKCLESIEAHD 287
Query: 466 TPVECVCFGHSE 501
V V G +
Sbjct: 288 DAVNTVVSGFDD 299
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI-GR-QSCLMSLSGHTTPVECV 483
F H+ V C+A K +L +G DKK+ +W G+ +C+ L+GHT PV+C+
Sbjct: 262 FKKHRLAVLCIAAAGK---LLFSGAADKKICVWRREGKVHTCVSVLTGHTGPVKCL 314
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L AH A C+A+ K + A G D V+LW I CL + + PV + F
Sbjct: 184 LDTLTAHTAGCYCIAIDPKG-RYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISFN 242
Query: 493 HS 498
+S
Sbjct: 243 YS 244
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +1
Query: 301 RSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVEC 480
RSWK H+ V +A H S +LAT G D+KV +W + C GH V
Sbjct: 96 RSWK-----GHEGPVMGMAC-HASGGLLATAGADRKVLVWDVDGGFCTHYFRGHKGVVSS 149
Query: 481 VCFGHSEDLDVLV 519
+ F + ++L+
Sbjct: 150 ILFHPDSNKNILI 162
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Frame = +1
Query: 262 SRNNLLI---TMEATRRSWKLQEFV------AHKANVNCLAMGHKSNQVLATGGDDKKVN 414
+RN+ L+ + + T W+L + V HK + + +Q + T DK V
Sbjct: 508 ARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFS-TVDQCVMTASGDKTVK 566
Query: 415 LWAIGRQSCLMSLSGHTTPV 474
+WAI SCL + GHT+ V
Sbjct: 567 IWAISDGSCLKTFEGHTSSV 586
Score = 34.7 bits (76), Expect = 0.051
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 501 RLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+L + + +++WDLE K +R++ GH+G + M H G
Sbjct: 73 KLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASG 114
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
L AG+ L +WD++ F GHKG + + FHP
Sbjct: 117 LATAGADRKVL-VWDVDGGFCTHYFRGHKGVVSSILFHP 154
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 373 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
N ++ TG DK V LW +SC+ +GH + V F
Sbjct: 416 NVLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAF 454
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
H+ V LA+G K+ +++ATGG D +NLW
Sbjct: 624 HEDKVWALAVGKKT-EMIATGGGDAVINLW 652
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
AH ++N +A+ +++ ++ TG +D+ ++W + +++L GH + V F
Sbjct: 497 AHDKDINSVAVA-RNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEF 549
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQ-VLATGGDDKKVNLWAIG----RQSCLMSLSGHTTPVECVC 486
F HK V+ + SN+ +L +G DD V +W + + CL + H + V +
Sbjct: 140 FRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIA 199
Query: 487 FGHSED 504
SED
Sbjct: 200 L--SED 203
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 373 NQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
+++L + G +++ +W + C+ S GH PV
Sbjct: 72 DKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPV 105
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 367 KSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLVP*KFG 546
K + L T D+ + +W + C L GHT V+ +C H + D+LV F
Sbjct: 138 KGDSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMC-SHPTNSDLLVSGSRDGCFA 196
Query: 547 IWKL 558
+W L
Sbjct: 197 LWDL 200
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
L +G QT +K+WD+E K GH G +K M HP
Sbjct: 144 LTASGDQT--IKVWDVEENKCTGVLIGHTGTVKSMCSHP 180
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 483 VFWSF-RRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
V WS RL +GS+ LKIW++ KL + GH + +D+ P G
Sbjct: 408 VSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDG 456
Score = 31.5 bits (68), Expect = 0.47
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 480 CVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGH 587
CV W + GSQ +K+W+ KL+R GH
Sbjct: 246 CVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGH 281
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
T D +W I + ++ LSGHT V CV +G
Sbjct: 216 TSSKDGDARIWDITLKKSIICLSGHTLAVTCVKWG 250
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 316 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 462
Q H V C++ Q LA+G D V LW + ++ L + GH
Sbjct: 103 QTIAGHAEAVLCVSFSPDGKQ-LASGSGDTTVRLWDLYTETPLFTCKGH 150
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLW-AIGRQSCLMSLSGHTTPVECVCFGHSED 504
L S +L T GDD V+LW GR + L H+ P VCF S +
Sbjct: 184 LDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNE 235
Score = 35.9 bits (79), Expect = 0.022
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = +1
Query: 343 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 504
++ ++ K ++ + +GG + V +W + R+ C+ L GHT+ + V + ++
Sbjct: 95 LSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDE 148
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 343 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 438
VN + H +N V+A+ G+DKK++LW QS
Sbjct: 46 VNSVKWNH-TNLVVASTGEDKKISLWRKNGQS 76
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 501 RLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAI 599
R C+G +KIWDL+ ++ GH I
Sbjct: 106 RYICSGGTGQIVKIWDLQRKLCIKKLKGHTSTI 138
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 36.3 bits (80), Expect = 0.017
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 373 NQVLATGGDDKKVNLWAIGRQS---CLMSLSGHTTPVECVCFGHSEDLDVLV 519
+ +L +G D+ V +W G S CL LSGHT PV+ + ++LD +V
Sbjct: 336 SDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKELDDVV 387
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 462
+++ H+ V C A+ +S + + TG DD+ V +W++ CL S GH
Sbjct: 298 IKKLRGHRNAVYC-AIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGH 346
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 465 NPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAI 599
N +F R GS +KIW +E A L + GH+G I
Sbjct: 306 NAVYCAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDI 350
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
H+ ++ LA+ +N ++A+ +D + +W + + L GHT V + F
Sbjct: 346 HEGDITDLAVS-SNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAF 397
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 35.5 bits (78), Expect = 0.029
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 349 CLAMGHKSNQVLATGGDDKKVNLWAIGR--QSCLMSLSGHTTPVECVCFGHSEDL 507
C + + + + G +D V + + + +C+ L GH PV CV + H E+L
Sbjct: 408 CPLLSLEKGEYIVAGSEDSNVYFYDLTKPKHTCVNKLQGHRFPVMCVAWNHGENL 462
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +1
Query: 244 EILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWA 423
+IL + + + L L++ H +V +NQ +A+ DK + +W
Sbjct: 186 DILAYGASDGSLTVCSLLEEPSVLKQLTGHSKDVTDFDFS-SNNQYIASSSLDKTIRVWE 244
Query: 424 IGRQSCLMSLSGHTTPVECVCF 489
+ R C+ + G +P C+ F
Sbjct: 245 LSRGVCIRVIYG-ISPQYCIRF 265
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 465 NPCRMCVFWSFRRLR----CAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
N +C+ WS LR +G TG+++ WD + LL+ + HKG + + P
Sbjct: 245 NGSELCI-WSLLSLRYGVLVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASP 299
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 462
H+ V C A+ +S + + TG DD+ V +W++ CL S GH
Sbjct: 244 HRNAVYC-AILDRSGRYVITGSDDRLVKVWSMDTAYCLASCRGH 286
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 483 VFWSF-RRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+ WS R A + +W+ L+ + TGH + MD HP+
Sbjct: 550 IAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPF 597
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 34.7 bits (76), Expect = 0.051
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLW---AIGRQSCLMSLSGHTTPVECV 483
H+ V CLA + ++ +GG DK + +W G SCL L H PV+C+
Sbjct: 380 HRLAVLCLAA---AGSLVLSGGADKNICVWRRNGDGSHSCLSVLMDHVGPVKCL 430
Score = 34.3 bits (75), Expect = 0.067
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 286 MEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT 465
+E RR L+ + H V+CL++ + +L +G DK + +W + CL S+ H
Sbjct: 235 VEVRRRKNVLK--IRHYDAVSCLSLNEELG-LLYSGSWDKTLKVWRLSDSKCLESIQAHD 291
Query: 466 TPVECVCFGHSE 501
+ V G +
Sbjct: 292 DAINTVAAGFDD 303
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 34.3 bits (75), Expect = 0.067
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR 432
L+ H VNC++ K+ ++LA+ DD+ + +W G+
Sbjct: 478 LEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIWGPGK 517
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 307 WKLQ-EFVAHKANVNCL--AMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVE 477
WK +F H+ + + G + +A+G +D +V +W + L LSGH+ V
Sbjct: 430 WKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVN 489
Query: 478 CV 483
CV
Sbjct: 490 CV 491
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 420 GNWKTKL-FNES*WTYNPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGA 596
G WK L F+ + R C +GS+ + IW+L+ K L +GH
Sbjct: 428 GEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMT 487
Query: 597 IKCMDFHP 620
+ C+ ++P
Sbjct: 488 VNCVSWNP 495
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 34.3 bits (75), Expect = 0.067
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
L ++ ++A+G +DKKV +W + C +++ H V V + +
Sbjct: 220 LTFNWENRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNN 267
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 489 WSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
W R + +GS+ +K+WD+ K T H+ + + ++ Y
Sbjct: 224 WENRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNY 268
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAA-KLLRTFTGHKGAIKCMDFHPYG 626
+GS ++WD AA + +RTF GH+G + + F P G
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDG 260
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAA-KLLRTFTGHKGAIKCMDFHPYG 626
+GS ++WD AA + +RTF GH+G + + F P G
Sbjct: 160 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDG 198
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 34.3 bits (75), Expect = 0.067
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAA-KLLRTFTGHKGAIKCMDFHPYG 626
+GS ++WD AA + +RTF GH+G + + F P G
Sbjct: 222 SGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDG 260
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 34.3 bits (75), Expect = 0.067
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW-A 423
+L +S + +I AT S + + H + ++ LA S+ + DD + +W A
Sbjct: 57 LLASASVDKTMILWSATNYSL-IHRYEGHSSGISDLAWSSDSHYT-CSASDDCTLRIWDA 114
Query: 424 IGRQSCLMSLSGHTTPVECVCFGHSEDLDV 513
CL L GHT V CV F +L V
Sbjct: 115 RSPYECLKVLRGHTNFVFCVNFNPPSNLIV 144
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+GS+ + +WDL+A +L+ GH A+ + HP
Sbjct: 275 SGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHP 310
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 313 LQEFVAHKANVNCL--AMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
L+ + H V C+ A + + + +G +D V LW + ++ L L GHT V
Sbjct: 248 LKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAV 303
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAA-KLLRTFTGHKGAIKCMDFHP 620
C+ S L+IWD + + L+ GH + C++F+P
Sbjct: 101 CSASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNP 138
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 34.3 bits (75), Expect = 0.067
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 468 PCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
P R+ F L A +K+ + ++R GHKG + +DFHP G
Sbjct: 106 PIRVLAFNGSGSLLAAAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPNG 158
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 33.9 bits (74), Expect = 0.089
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
HK++ + T DD + L+ + +CL +++ V+ VCF
Sbjct: 42 HKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 83
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 33.9 bits (74), Expect = 0.089
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
HK++ + T DD + L+ + +CL +++ V+ VCF
Sbjct: 39 HKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 80
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 33.9 bits (74), Expect = 0.089
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSE 501
FV H +V L + +Q L + DK V LW + ++CL S H+ V C+ F +
Sbjct: 464 FVGHLDDV--LDLSWSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS-HSDYVTCIQFNPVD 520
Query: 502 DLDVLVHKLVP*KFGIWKL 558
D + + + K IW +
Sbjct: 521 D-NYFISGSLDAKVRIWSI 538
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 489 WSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
WS + + S +++WDL + L+ F+ H + C+ F+P
Sbjct: 476 WSKSQHLLSSSMDKTVRLWDLSSKTCLKVFS-HSDYVTCIQFNP 518
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 33.9 bits (74), Expect = 0.089
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+G G +K WD+ A ++ GHK ++C D P
Sbjct: 153 SGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSP 188
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 382 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVEC 480
L +GGDD V W + + + L GH V C
Sbjct: 151 LVSGGDDGVVKYWDVAGATVISDLLGHKDYVRC 183
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 33.9 bits (74), Expect = 0.089
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ-----SCLMSLSGHTTPVECVCFGH 495
H+ + CLA+ ++ ++ +G DK + +W G SCL L GHT PV+ +
Sbjct: 327 HRKAIMCLAV---ASDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSV 383
Query: 496 SE 501
S+
Sbjct: 384 SD 385
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+ S +K+WD E K+L +F GH+ + + F P G
Sbjct: 516 SASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNG 553
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = +1
Query: 238 KLEILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNL 417
K + LL S + + + WK Q+F H L + ++N AT D + L
Sbjct: 376 KGDYLLTGSVDRTAVVWDVKAEEWK-QQFEFHSGPT--LDVDWRNNVSFATSSTDSMIYL 432
Query: 418 WAIGRQSCLMSLSGHTTPVECV 483
IG + +GH V CV
Sbjct: 433 CKIGETRPAKTFTGHQGEVNCV 454
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
F H+ VNC+ + +LA+ DD +W I + + + L HT +
Sbjct: 444 FTGHQGEVNCVKWD-PTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEI 493
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 570 RTFTGHKGAIKCMDFHPYG 626
+TFTGH+G + C+ + P G
Sbjct: 442 KTFTGHQGEVNCVKWDPTG 460
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKG 593
+GS ++ IW ++ K+++T+TG+ G
Sbjct: 558 SGSLDKSIHIWSIKEGKIVKTYTGNGG 584
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 268 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
+N ++ ++ + + E H+A+VN +A +S + + +GGDD + +W +
Sbjct: 242 SNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL 294
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 268 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
+N ++ ++ + + E H+A+VN +A +S + + +GGDD + +W +
Sbjct: 242 SNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL 294
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +1
Query: 268 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
+N ++ ++ + + E H+A+VN +A +S + + +GGDD + +W +
Sbjct: 242 SNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWEL 294
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +1
Query: 250 LLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIG 429
L SS + + +A + + L+ F+ H + V L + ++ + +D ++ W+I
Sbjct: 708 LATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSIN 767
Query: 430 RQSCLMSLSGHTTPV 474
SC G +T +
Sbjct: 768 NGSCTRVYKGGSTQI 782
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 501 RLRCAGSQTG-ALKIWDLE-AAKLLRTFTGHKGAIKCMDFHP 620
+LR A S +++WD + LRTF GH + +DFHP
Sbjct: 705 QLRLATSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHP 746
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 409 VNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 504
VN+ + Q+ SL GH P+ VC+ S D
Sbjct: 800 VNVLDVETQAIRHSLQGHANPINSVCWDPSGD 831
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 477 MCVFWS--FRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+ V WS +RL C GS G + ++D++ +KLL GH ++ + F P
Sbjct: 162 LSVAWSPNGKRLAC-GSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSP 210
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 301 RSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 468
RS L + H V L +VL +G DD VN+ ++ L S+SGHT+
Sbjct: 189 RSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMSGHTS 244
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 382 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
+ATG D+ V LW + ++ + ++S H V V F
Sbjct: 258 IATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAF 293
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L GS +K+W + L+RT TGH + + HP G
Sbjct: 32 LLLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSG 72
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
GS +++WDL+ ++T + H + + F P G
Sbjct: 261 GSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPG 297
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Frame = +1
Query: 328 AHKANVNCLA-------MGHKSNQVLATGGDDKKVNLWAIGRQSCL 444
AH+ ++ C++ +G + VL T GDDKKV LW + L
Sbjct: 385 AHEGDITCISWAPKAITVGERHAMVLGTSGDDKKVKLWEAPKSQSL 430
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 298 RRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
R K + H NV L + + + +G D + LW +G+Q CL + + HT V
Sbjct: 243 RTGSKSMKLRGHTDNVRVLLLD-STGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSV 300
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
HK +V LAM + + +L +GG +K + +W S M L GHT V
Sbjct: 212 HKESVYALAM-NDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNV 258
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
H V CLA+ K+N V+A+GG +V +W I
Sbjct: 125 HSDYVTCLAVAAKNNNVVASGGLGGEVFIWDI 156
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 298 RRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
R K + H NV L + + + +G D + LW +G+Q CL + + HT V
Sbjct: 243 RTGSKSMKLRGHTDNVRVLLLD-STGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSV 300
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
HK +V LAM + + +L +GG +K + +W S M L GHT V
Sbjct: 212 HKESVYALAM-NDTGTMLVSGGTEKVLRVWDPRTGSKSMKLRGHTDNV 258
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
H V CLA+ K+N V+A+GG +V +W I
Sbjct: 125 HSDYVTCLAVAAKNNNVVASGGLGGEVFIWDI 156
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS-CLMSLSGHTTPVECVCFGH 495
H V+ + K +L + G D KV +W + C+ + GH V +CF +
Sbjct: 281 HTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSN 336
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 501 RLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
R +G G WD ++ K+ RT H G ++HP
Sbjct: 515 RFVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHP 554
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 483 VFWSFRRLRCA-GSQTGALKIWDLEAAKLLRTFTGHK 590
V W+ R A G+ TG ++IWD K RT GH+
Sbjct: 258 VGWALRGTHLAVGTSTGKVQIWDASRCKRTRTMEGHR 294
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
+L SR+ ++ + + + + HK+ V L + N+ LA+GG+D ++ +W
Sbjct: 306 VLSSGSRDKSILQRDIRCQEDHVSKLAGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQ 364
Query: 427 GRQSCLMSLSGHTTPVECVCF 489
++ S HT V+ + +
Sbjct: 365 HSTQPVLKYSEHTAAVKAIAW 385
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 295 TRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
TRR+ K + ++ H +++CLA+ H ++ +G DK + +W + CL S+ H +
Sbjct: 162 TRRNHK-RLWIEHADSISCLAV-HAG--IIYSGSWDKTLKVWRLSDLKCLESIKAHDDAI 217
Query: 475 ECVCFG 492
+ G
Sbjct: 218 NGLVAG 223
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAAKLLRTFT---GHKGAIKCMDFHP 620
C+GS ++ +W E +L F GH+G +KC+ P
Sbjct: 332 CSGSADKSIGLWRREVTGMLCKFGVIHGHEGPVKCLQASP 371
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 268 NNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR-QSCL 444
N + + R KL+ + H A +NCLA S V ATG D V ++ + + S
Sbjct: 512 NREAVVWDRVSREMKLKNMLYHSARINCLAWSPNSTMV-ATGSLDTCVIVYEVDKPASSR 570
Query: 445 MSLSG 459
M++ G
Sbjct: 571 MTIKG 575
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 498
+F H NV+ LA+ + + +G D + W +GR C + ++C H
Sbjct: 319 QFSGHMKNVSSLAVLKGNADYILSGSYDGLICKWMLGRGFCGKLQRTQNSQIKCFA-AHE 377
Query: 499 EDL 507
E++
Sbjct: 378 EEI 380
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ--SCLMSLSGHTTPVECV 483
HK V CL + + ++ +G DK + +W +CL L+GHT PV+C+
Sbjct: 337 HKLAVLCLEV---AGSLVFSGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCL 386
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 483
++ H V+CL++ + +L + D+ + +W I CL S+ H V V
Sbjct: 202 WIKHADAVSCLSLNDEQG-LLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSV 254
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 301 RSWK-LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTP 471
R WK L+EF A K N + S + + TG D K+ +W + ++ + T P
Sbjct: 119 RVWKNLKEFSAFKCNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNQSLHKRSGTLP 176
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
GS+ G + WDL AK+L F H + + +HP
Sbjct: 246 GSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHP 280
Score = 28.3 bits (60), Expect = 4.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 543 WDLEAAKLLRTFTGHKGAIKCMDFH 617
WD+ +++R F GH G + + F+
Sbjct: 87 WDVSTGRVIRKFRGHDGEVNAVKFN 111
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHT-TPVECVCF 489
H V C +G +VL +G DK + +W + C M+L H T +C+
Sbjct: 311 HSGEVTCFVVG---GEVLYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLLCW 361
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+GS+ + IW KL+ GH GA+ C+ + P
Sbjct: 506 SGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSP 541
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/84 (26%), Positives = 37/84 (44%)
Frame = +1
Query: 232 VLKLEILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKV 411
+L EI LW+ + I + + K F+ +C G+K +A+G +D +V
Sbjct: 462 LLNQEIRLWNIEGDPKIV--SRYKGHKRSRFIIR----SCFG-GYKQ-AFIASGSEDSQV 513
Query: 412 NLWAIGRQSCLMSLSGHTTPVECV 483
+W ++ L GH V CV
Sbjct: 514 YIWHRSTGKLIVELPGHAGAVNCV 537
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGR 432
E H VNC++ + +LA+ DD + +W + R
Sbjct: 526 ELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLDR 563
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 244 EILLWSSRNNLLI-TMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
E++ SS +++ + +EA R S + VAH ++VN + +S ++ +G DD +W
Sbjct: 243 EVVAGSSDDSIYVYDLEANRVSLRT---VAHTSDVNTVCFADESGNLILSGSDDNLCKVW 299
Query: 421 ----AIGRQSCLMSLSGH 462
IGR L GH
Sbjct: 300 DRRCFIGRDKPAGVLVGH 317
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +1
Query: 322 FVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
F +HK V L +K +LA+G D + LW + +S L L GH V + F
Sbjct: 102 FNSHKGAVTALRY-NKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVF 156
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 504 LRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
L G G+++IWD E F HKGA+ + ++ G
Sbjct: 78 LVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVG 118
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 LKIWDL-EAAKLLRTFTGHKGAIKCMDFHP 620
+KIWD + LRT +GH + +DFHP
Sbjct: 574 IKIWDASDPGYFLRTISGHAAPVMSIDFHP 603
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 LKIWDL-EAAKLLRTFTGHKGAIKCMDFHP 620
+KIWD + LRT +GH + +DFHP
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 LKIWDL-EAAKLLRTFTGHKGAIKCMDFHP 620
+KIWD + LRT +GH + +DFHP
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 LKIWDL-EAAKLLRTFTGHKGAIKCMDFHP 620
+KIWD + LRT +GH + +DFHP
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 LKIWDL-EAAKLLRTFTGHKGAIKCMDFHP 620
+KIWD + LRT +GH + +DFHP
Sbjct: 576 IKIWDASDPGYFLRTISGHAAPVMSIDFHP 605
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 382 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 483
L TG DD +W++ R SC L+ H PV+ V
Sbjct: 1035 LITGSDDWTARVWSVSRGSCDAVLACHAGPVQSV 1068
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 382 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECV 483
+ +G DD V +W L L GH + V CV
Sbjct: 912 IVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCV 945
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFG 492
L EF H V L + + L + DK V LW +G CL + H + V V F
Sbjct: 321 LYEFRGHTGEV--LDISWSKDNYLLSASMDKTVRLWKVGSNDCL-GVFAHNSYVTSVQFN 377
Query: 493 HSEDLDVLVHKLVP*KFGIWKLLNC 567
+ + + + K IW + C
Sbjct: 378 PVNE-NYFMSGSIDGKVRIWNISGC 401
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 32.3 bits (70), Expect = 0.27
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 483 VFWSFRRLRCA-GSQTGALKIWDLEAAKLLRTFTGHK 590
V W+ R A G+ +G ++IWD+ K +RT GH+
Sbjct: 215 VGWALRGTHLAIGTSSGTVQIWDVLRCKNIRTMEGHR 251
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSED 504
L + +Q L + DK V LW + Q+CL S H+ V C+ F +D
Sbjct: 517 LDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFS-HSDYVTCIQFNPVDD 566
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 250 LLWSSRNNLLIT-MEATRRSWKLQ-----EFVAHKANVNCLAMGHKSNQVLATGGDDKKV 411
L WS +LL + M+ T R W L + +H V C+ ++ +G D KV
Sbjct: 519 LAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKV 578
Query: 412 NLWAI 426
+W+I
Sbjct: 579 RVWSI 583
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 489 WSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
WS +L + S +++WD+E L+ F H + C+ F P
Sbjct: 514 WSKSQLLLSSSMDKTVRLWDIETKTCLKLF-AHNDYVTCIQFSP 556
Score = 31.9 bits (69), Expect = 0.36
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +1
Query: 316 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSC-LMSLS-GHTTPVE-CVC 486
QE AH+ V + ++ LA+GG D+ +++W + Q C LMS++ G TP+ +C
Sbjct: 398 QEIQAHEGAVWTIKFSQDAHY-LASGGADRVIHVWEV--QECELMSMNEGSLTPIHPSLC 454
Query: 487 FGHSEDLDVLVHK 525
++ V+ K
Sbjct: 455 DSSGNEITVVEKK 467
Score = 31.5 bits (68), Expect = 0.47
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +1
Query: 352 LAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLV 531
L + +Q+L + DK V LW I ++CL L H V C+ F ++ L L
Sbjct: 510 LDLSWSKSQLLLSSSMDKTVRLWDIETKTCL-KLFAHNDYVTCIQFSPVDENYFLSGSLD 568
Query: 532 P*KFGIWKL 558
K IW +
Sbjct: 569 A-KIRIWSI 576
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Frame = +1
Query: 250 LLWSSRNNLLIT-MEATRRSWKLQ-----EFVAHKANVNCLAMGHKSNQVLATGGDDKKV 411
L WS LL + M+ T R W ++ + AH V C+ +G D K+
Sbjct: 512 LSWSKSQLLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKI 571
Query: 412 NLWAI 426
+W+I
Sbjct: 572 RIWSI 576
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAI 599
+G G L++WD++ KLL GH A+
Sbjct: 374 SGHMDGNLRLWDIQTGKLLSEVAGHSSAV 402
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 286 MEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSG 459
+E+T S AH+ + + S L TGG D+ V +W + + SL G
Sbjct: 215 VESTIPSTCANRIHAHEGGCGSIVFEYNSG-TLFTGGQDRAVKMWDTNSGTLIKSLYG 271
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 31.9 bits (69), Expect = 0.36
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLDVLVHKLVP*KF 543
H+ N +LAT DD + L+ + + GHT + +CF SED ++ +
Sbjct: 524 HRVNGLLATVADDFVIRLYDVVTLKMVREFRGHTDRITDLCF--SEDGKWVISSSMDGSL 581
Query: 544 GIWKLL 561
IW ++
Sbjct: 582 RIWDVI 587
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTG 584
GSQ G L++W++ K+L F G
Sbjct: 157 GSQEGPLQLWNINTKKMLYQFKG 179
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.9 bits (69), Expect = 0.36
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Frame = +1
Query: 214 VTQTLIVLK-----LEILLWSSRNNLLITMEATRRS--WK-----LQEFVAHKANVNCLA 357
VT T+ VLK +++S ++ L T A R + WK LQ F H + +A
Sbjct: 287 VTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVA 346
Query: 358 MGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
H S + L T DK LW I + L+ GH+ V + F
Sbjct: 347 F-HPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAF 389
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
AH V+ + + LAT D KVN+W+ S + SL+GH + V
Sbjct: 463 AHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVKSLAGHESKV 511
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 537 KIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
K+W + LL+TF GH + + FHP G
Sbjct: 323 KLWKTDGT-LLQTFEGHLDRLARVAFHPSG 351
>At3g04470.1 68416.m00474 expressed protein
Length = 423
Score = 31.5 bits (68), Expect = 0.47
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 387 NWRR*QKSKFMGNWKTKLFN 446
NWRR ++++ +GNWK K+++
Sbjct: 63 NWRRQERTEMVGNWKAKVYD 82
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV 474
H + +ATG DK V LW + C+ GH + V
Sbjct: 508 HPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMV 544
Score = 30.7 bits (66), Expect = 0.83
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
GS +++WD++ + +R F GH+ + + P G
Sbjct: 517 GSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDG 553
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/42 (23%), Positives = 19/42 (45%)
Frame = +3
Query: 501 RLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
R +G + G + +WDL A+ + GH + + + G
Sbjct: 554 RYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEG 595
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
+ F+ H+ + LA+G DD V LW I ++CL ++ + V CV F
Sbjct: 789 ISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINERNCLGTIR-NIANVCCVQF 846
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 369 VQSGFSNWRR*QKSKFMGNWKTKLF 443
V S +NWRR +KS+ +G WK K++
Sbjct: 272 VLSPQTNWRRQEKSEMVGPWKAKVY 296
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 30.7 bits (66), Expect = 0.83
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 498
EF H + L+ K L + D+ V LW +G + + H + V CV F
Sbjct: 358 EFRGHTGEILDLSWSEKG--FLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPV 415
Query: 499 EDLDVLVHKLVP*KFGIW 552
+D + + + K IW
Sbjct: 416 DD-NYFISGSIDGKVRIW 432
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +1
Query: 250 LLWSSRNNLLIT-MEATRRSWKL---QEFV---AHKANVNCLAMGHKSNQVLATGGDDKK 408
L WS + LL + ++ T R W++ E + +HK+ V C+A + +G D K
Sbjct: 369 LSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGK 428
Query: 409 VNLWAIGR 432
V +W + +
Sbjct: 429 VRIWDVSQ 436
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 30.7 bits (66), Expect = 0.83
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+GS G + IW + +LLR + + C++ HP+
Sbjct: 327 SGSDCGRIFIWRKKDGELLRAMEADRHVVNCIESHPH 363
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 438
S N + + RR ++ HK VN ++ + +L +G DD++V LW S
Sbjct: 30 SFSNRFSASEDLLRRLGLDKKLDKHKGCVNTVSF-NADGDILLSGSDDRQVILWDWQTAS 88
Query: 439 CLMSL-SGH 462
+S SGH
Sbjct: 89 VKLSFDSGH 97
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 30.7 bits (66), Expect = 0.83
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIK 602
+ S G +++WD+ + + + F GH+GA++
Sbjct: 74 SASMDGDIRLWDISSRRTVCQFPGHQGAVR 103
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 477 MCVFWSF-RRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
+C+ +S + +GSQ G +KIW + +R F H + + F
Sbjct: 267 LCIDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSF 313
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 316 QEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCF 489
QE H +V L + + +L + DK V LW G CL + H V CV F
Sbjct: 266 QELYGHTGDV--LDLAWSDSNLLLSASKDKTVRLWRTGCDQCL-HVFHHNNYVTCVEF 320
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 304 SWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 450
++ +Q+ HK + L + LATGG+D V +W I L++
Sbjct: 188 AYMVQKINGHKGKIWTLKFS-PDGKYLATGGEDGVVKIWRITLSDSLLA 235
>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
family protein contains 1 WD-40 repeat (PF00400);
similar to anaphase-promoting complex subunit 4
GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
Length = 510
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 456 WTYNPCRMCVFWSFR---RLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
WT +P + +R + G + G + + D+E KLLR H A+ C+++ G
Sbjct: 59 WTISPGKPVTSLCWRPDGKAIAVGLEDGTISLHDVENGKLLRNLKPHDVAVVCLNWEEDG 118
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAI----GRQSCLMSLSGHTTPVECVCFGHS 498
HK V CL + ++ +G D + +W G CL L+GH PV+C+
Sbjct: 342 HKLAVLCLVA---AGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLAVERD 398
Query: 499 ED 504
++
Sbjct: 399 QE 400
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+GS G + IW + KL+R G + + ++ HP+
Sbjct: 338 SGSDCGHIFIWKKKGGKLVRAMVGDRRVVNQLESHPH 374
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 498
H +L TG V +W + Q+ + GHT V + F +
Sbjct: 362 HPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSEN 406
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 277 LITMEATRRSWKLQEFVAHKANVN--CLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 450
L +++ R +L HK N C S V+ATGG D L+ L +
Sbjct: 200 LASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATGGVDATAVLFDRPSGQILST 259
Query: 451 LSGHTTPVECVCFGHSEDL 507
L+GH+ V V F DL
Sbjct: 260 LTGHSKKVTSVKFVGDSDL 278
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
G+ +KIWD+++ + F GH G + + F G
Sbjct: 371 GTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENG 407
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHS 498
H +L TG V +W + Q+ + GHT V + F +
Sbjct: 362 HPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSEN 406
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 277 LITMEATRRSWKLQEFVAHKANVN--CLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMS 450
L +++ R +L HK N C S V+ATGG D L+ L +
Sbjct: 200 LASIDTLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATGGVDATAVLFDRPSGQILST 259
Query: 451 LSGHTTPVECVCFGHSEDL 507
L+GH+ V V F DL
Sbjct: 260 LTGHSKKVTSVKFVGDSDL 278
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
G+ +KIWD+++ + F GH G + + F G
Sbjct: 371 GTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENG 407
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
E H+A+VN +A S+ + T GDD + +W I
Sbjct: 262 ELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDI 297
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPY 623
+GS G + IW + +L+R + + C++ HP+
Sbjct: 351 SGSDCGRIFIWRKKGGELIRVMEADRHVVNCIEPHPH 387
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 WSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQ 435
+S+ NL++ +E + KL++ HK VN ++ + + VL +G DD++V LW
Sbjct: 39 FSASENLVLRLEIYK---KLEK---HKGCVNTVSFNAEGD-VLISGSDDRRVVLWDWQLG 91
Query: 436 SCLMSL-SGHTTPV 474
+ +S SGH V
Sbjct: 92 NVKLSFHSGHANNV 105
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 319 EFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAI 426
E H+A+VN +A S+ + + GDD + +W I
Sbjct: 262 ELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDI 297
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGH 587
+GS G L++WDL + R F GH
Sbjct: 80 SGSWDGELRLWDLATGETTRRFVGH 104
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+K+W+L+ KL + GH G + + P G
Sbjct: 175 VKVWNLQNCKLRNSLVGHSGYLNTVAVSPDG 205
>At3g17540.1 68416.m02240 F-box family protein similar to
hypothetical protein GB:AAD18122 from [Arabidopsis
thaliana];contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 396
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 305 DLRVASIVINKLLRELHKRISSFKT-INVWVTIFINKI*EYCAEKIFLAI 159
D V SIV + L LH+ I SF + +WVT I++ + FLA+
Sbjct: 250 DTAVLSIVGGEKLAVLHQNIQSFSNEMRIWVTNKIDEAKDLTWSNFFLAV 299
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
AGS + IWD + + + GH G++ FHP
Sbjct: 289 AGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHP 324
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
G +K+WDL + T GH+ I M P G
Sbjct: 198 GGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDG 234
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 298 RRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 462
R+ +Q F K + ++ ++++ TGG D V +W + + M+L GH
Sbjct: 169 RQRGAIQTF-PDKYQITAVSFSDAADKIF-TGGVDNDVKVWDLRKGEATMTLEGH 221
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 537 KIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
++WDL A+ + F GH + +DF P G
Sbjct: 155 RVWDLRTARNILIFQGHIKQVLSVDFSPNG 184
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +3
Query: 435 KLFNES*WTYNPCRMCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCM 608
K + W Y + + + GS +K W L+ LL T +GHK + +
Sbjct: 577 KWYEPKDWRYTGIHALAYSEYGHVY-TGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTL 633
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGH 587
+GS G L++WDL A R F GH
Sbjct: 80 SGSWDGELRLWDLAAGVSTRRFVGH 104
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+K+W+L KL T GH G + + P G
Sbjct: 176 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 206
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 528 GALKIWDLEAAKLLRTFTGH 587
G LK+W +E +++RT+ GH
Sbjct: 134 GCLKLWSVEDGRVIRTYEGH 153
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
IL + L+I + RS ++ + H V C S Q LA+GG+D V++W
Sbjct: 237 ILTTGGMDGLIINNDVRIRSPIVETYRGHTQEV-CGLKWSGSGQQLASGGNDNVVHIW 293
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
IL + L+I + RS ++ + H V C S Q LA+GG+D V++W
Sbjct: 227 ILTTGGMDGLIINNDVRIRSPIVETYRGHTQEV-CGLKWSGSGQQLASGGNDNVVHIW 283
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
G +G + +W++ KLL+ + GH ++ C+ F
Sbjct: 96 GGISGDIYLWEVATGKLLKKWHGHYRSVTCLVF 128
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTF---TGHKGAI 599
+G + A++IWD E KLL+ GHK AI
Sbjct: 192 SGGEDAAIRIWDAETGKLLKQSDEEVGHKEAI 223
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
G G +WDL A K + + H+ I +DF+P
Sbjct: 324 GQDYGVFNVWDLRAGKSVFHWELHERRINSIDFNP 358
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 340 NVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGH 495
+VN L H + AT G D N W + L ++S P+ C F H
Sbjct: 248 SVNSLNF-HPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPIPCSSFNH 298
>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase II isoform (GI:15418718) [Mus musculus];
contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
repeats and Pfam PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 1101
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 477 MCVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAI 599
+C+F RL G G +++WDLE KLL + H G +
Sbjct: 449 LCMFTFCSRL-WVGYSNGTVQVWDLE-GKLLGGWVAHSGPV 487
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 513 AGSQTGALKIWDLEAAKLLRTFTGH 587
+GS G L++WDL + R F GH
Sbjct: 80 SGSWDGELRLWDLATGESTRRFVGH 104
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
+K+W+L+ KL T GH G + + P G
Sbjct: 175 VKVWNLQNCKLRNTLAGHSGYLNTVAVSPDG 205
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 277 LITMEATRRSWKLQEFVAHKAN---VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLM 447
L +++A + +L HK N + + + H S V+ATGG D L+ L
Sbjct: 200 LASVDALEKFTQLSSHPLHKTNKPGIFSMDILH-SKDVIATGGIDTTAVLFDRPSGQILS 258
Query: 448 SLSGHTTPVECVCFGHSEDL 507
+L+GH+ V + F DL
Sbjct: 259 TLTGHSKKVTSIKFVGDTDL 278
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHPYG 626
G+ +KIWD+++ + F GH G I + F G
Sbjct: 372 GTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENG 408
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 DLEAAKLLRTFTGHKGAIKCMDFHP 620
D +A L+RTF H I +DFHP
Sbjct: 70 DTQARPLIRTFYDHAEPINDLDFHP 94
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLD 510
HK+ V C A ATGG D + L+ + + ++S P+ + H+E ++
Sbjct: 30 HKSVVRC-ARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDHAEPIN 88
Query: 511 VL 516
L
Sbjct: 89 DL 90
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 546 DLEAAKLLRTFTGHKGAIKCMDFHP 620
D +A L+RTF H I +DFHP
Sbjct: 162 DTQARPLIRTFYDHAEPINDLDFHP 186
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDLD 510
HK+ V C A ATGG D + L+ + + ++S P+ + H+E ++
Sbjct: 122 HKSVVRC-ARFSPDGMFFATGGADTSIKLFEVPKVKQMISGDTQARPLIRTFYDHAEPIN 180
Query: 511 VL 516
L
Sbjct: 181 DL 182
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 468
H+ V + S VL TGG D + W I R C L T
Sbjct: 189 HRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQT 234
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +1
Query: 244 EILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMG-HKSNQVLATGGDDKKVNLW 420
+ L+ SS + L +R +Q + H + + G S + + +GGDD +W
Sbjct: 356 QYLMASSMDGTLYDQRMVKRGVGVQTYEGHVNSHTPIEFGIDPSERFILSGGDDCYTRIW 415
Query: 421 AIGRQSCLMSLSGHTTPV-ECVCFGHSE 501
+I + LMS + + V VC+ E
Sbjct: 416 SI-KSGQLMSENKFSNSVPSVVCWSADE 442
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 364 HKSNQVLATGGDDKKVNLW--AIGRQSCLMSLSGH 462
H + +L +GG D+ V LW GR+ C SL GH
Sbjct: 277 HPTKSLLVSGGKDQLVKLWDTRSGRELC--SLHGH 309
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 519 SQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
S+ +K++D+ K L++F GH + + +HP
Sbjct: 329 SKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHP 362
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 313 LQEFVAHKANV-NCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPV-ECV 483
L + AH ++ CL +N+ LAT DK V +W + L+GH V +CV
Sbjct: 204 LHKLQAHNGHILKCLLS--PANKYLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCV 260
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +3
Query: 480 CVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFH 617
CVF S ++W + A K ++ + GH A C H
Sbjct: 259 CVFSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHKATVCCALH 304
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
IL + ++ + RS + +V H V C +S + LA+GG+D V++W
Sbjct: 207 ILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEV-CGLKWSESGKKLASGGNDNVVHIW 263
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 247 ILLWSSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
IL + ++ + RS ++ ++ H V C +S + LA+GG+D V++W
Sbjct: 189 ILTTGGMDGKIVNNDVRIRSSIVETYLGHTEEV-CGLKWSESGKKLASGGNDNVVHIW 245
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDF 614
LK ++ K ++ FTGH G ++C+ F
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGVVRCVAF 206
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 310 KLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLW 420
K+Q+F H V C+A VL++ ++ + +W
Sbjct: 190 KIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVW 226
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 480 CVFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDF 614
C+ + S +KIW+L+ KL + TGH+ + DF
Sbjct: 223 CLLSPGNKYLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCDF 267
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 313 LQEFVAHKANV-NCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGH 462
L + AH +++ CL N+ LAT DK V +W + L+GH
Sbjct: 210 LHKLQAHNSHILKCLLS--PGNKYLATASSDKTVKIWNLDGFKLEKVLTGH 258
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 438
+ +F HKA V C+ + V + +D +N+W R S
Sbjct: 379 IYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVS 420
>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein / tetratricopeptide repeat
(TPR)-containing protein contains Pfam profiles PF00564:
PB1 domain, PF00515: TPR Domain
Length = 751
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 328 AHKANVNCLAMGHKSNQVLATGGDDKKV 411
A +A++ + H SN+ AT GD+KKV
Sbjct: 721 ASEADIATVVKNHCSNEAAATEGDEKKV 748
>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
weak hit to Pfam profile PF00023: Ankyrin repeat
Length = 497
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 378 GFSNWRR*QKSKFMGNWKTKLF 443
G +NWRR +K + +G WK +++
Sbjct: 154 GRTNWRRQEKMENVGEWKARVY 175
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +1
Query: 331 HKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTT 468
H+ V + S VL TGG D + W I R C L T
Sbjct: 189 HRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQT 234
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 382 LATGGDDKKVNLWAIGRQSCLMSLSGHTTPV-ECVCF 489
L +G D + +W++ C+ +L+ HT+ V +C+
Sbjct: 280 LYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLICW 316
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 343 VNCLAMGHKSNQVLATGGDDKKVNLWAIGRQSCLMSLSGHTTPVECVCFGHSEDL 507
VN +A H ATGG D VN+W + L S + T + + F L
Sbjct: 244 VNSIAF-HPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQL 297
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 516 GSQTGALKIWDLEAAKLL 569
GS+ G +K+WD +AAKL+
Sbjct: 2393 GSKDGEVKLWDAKAAKLI 2410
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 483 VFWSFRRLRCAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
V W L G+Q A+ ++ + A++L T GHK ++ C + P
Sbjct: 25 VSWGASGLVSFGAQN-AVAVFCPKTAQILTTLPGHKASVNCTHWLP 69
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 313 LQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 438
+++ HK V L KS LA+G DD V +W + S
Sbjct: 108 VRDLSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPS 149
>At1g04780.1 68414.m00474 ankyrin repeat family protein contains
Pfam PF00023: Ankyrin repeat
Length = 664
Score = 27.9 bits (59), Expect = 5.8
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 390 WRR*QKSKFMGNWKTKLFN 446
WRR +K++ +G WK K+++
Sbjct: 281 WRRQEKTEMVGQWKAKVYD 299
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 331 HKANVNCLAMG--HKSNQVLATGGDDKKVNLW 420
H + V+C+A + + L +GG+DK V +W
Sbjct: 247 HNSAVSCVAFSLFQEKGRFLISGGNDKTVKIW 278
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 331 HKANVNCLAMG--HKSNQVLATGGDDKKVNLW 420
H + V+C+A + + L +GG+DK V +W
Sbjct: 273 HNSAVSCVAFSLFQEKGRFLISGGNDKTVKIW 304
>At3g42723.1 68416.m04459 hypothetical protein
Length = 806
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 288 GSYPKIMETTRICCTQSKCQLPSNGT*VQSGFSNWRR*QKSKFMGNWK 431
GS+ K + CC + L SNG S N R ++S M WK
Sbjct: 710 GSFSKQQDRVYKCCMMLEMLLVSNGV---SSLENTRALKRSAEMSRWK 754
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMD 611
CA T L W + + L T+ GH GA+ C D
Sbjct: 28 CAKDHTPTL--WFADNGERLGTYRGHNGAVWCCD 59
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMD 611
CA T L W + + L T+ GH GA+ C D
Sbjct: 28 CAKDHTPTL--WFADNGERLGTYRGHNGAVWCCD 59
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 510 CAGSQTGALKIWDLEAAKLLRTFTGHKGAIKCMD 611
CA T L W + + L T+ GH GA+ C D
Sbjct: 28 CAKDHTPTL--WFADNGERLGTYRGHNGAVWCCD 59
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/65 (20%), Positives = 29/65 (44%)
Frame = +1
Query: 259 SSRNNLLITMEATRRSWKLQEFVAHKANVNCLAMGHKSNQVLATGGDDKKVNLWAIGRQS 438
S ++ + T R L E+ H+ + +L +G DD KV +W +++
Sbjct: 439 SDYEGIVTVWDVTTRQ-SLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEA 497
Query: 439 CLMSL 453
++++
Sbjct: 498 SVINI 502
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 317 CSFHDLRVASIVINKLLRELHKRISSFKTINVWVTIFINKI*EYCAEKIFLAI 159
C FH + V+S+++ + E++ + SF T + T+F+ K+ K F +I
Sbjct: 796 CYFHPMPVSSVLLRTVGNEIYILVLSFATEDRVRTLFMYKMSAEAPSKGFPSI 848
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+KI D E K L+ TGH+ + FHP
Sbjct: 127 VKIIDCETGKCLKILTGHRRTPWVVRFHP 155
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 534 LKIWDLEAAKLLRTFTGHKGAIKCMDFHP 620
+KI D E K L+ TGH+ + FHP
Sbjct: 127 VKIIDCETGKCLKILTGHRRTPWVVRFHP 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,901
Number of Sequences: 28952
Number of extensions: 269865
Number of successful extensions: 1167
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -