Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1593X
         (591 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F6B6 Cluster: Defective in cullin neddylation protein...   132   6e-30
UniRef50_A7GQG7 Cluster: Putative uncharacterized protein; n=2; ...    33   5.0  
UniRef50_A5I547 Cluster: Rhodanese-like protein precursor; n=4; ...    33   6.6  
UniRef50_A5GEA1 Cluster: Rhodanese domain protein precursor; n=1...    32   8.7  

>UniRef50_Q2F6B6 Cluster: Defective in cullin neddylation protein;
           n=2; Endopterygota|Rep: Defective in cullin neddylation
           protein - Bombyx mori (Silk moth)
          Length = 326

 Score =  132 bits (319), Expect = 6e-30
 Identities = 64/85 (75%), Positives = 64/85 (75%)
 Frame = +1

Query: 259 MGHCLSCFKSQANAEIRSITGPHAKNDEVTDISVSVSVYPQVEPXXXXXXXXXXXXXXXX 438
           MGHCLSCFKSQANAEIRSITGPHAKNDEVTDISVSVSVYPQVEP                
Sbjct: 1   MGHCLSCFKSQANAEIRSITGPHAKNDEVTDISVSVSVYPQVEPLLSTSENNLNTNMNNL 60

Query: 439 XXXXXFGEQSSCDPLNVQKNLVCEK 513
                FGEQSSCDPLNVQKNLVCEK
Sbjct: 61  KVLNSFGEQSSCDPLNVQKNLVCEK 85



 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 510 KTPKLFNPKLPSIPRTMSSLGSSEKIS 590
           KTPKLFNPKLPSIPRTMSSLGSSEKIS
Sbjct: 85  KTPKLFNPKLPSIPRTMSSLGSSEKIS 111


>UniRef50_A7GQG7 Cluster: Putative uncharacterized protein; n=2;
           Bacillus cereus group|Rep: Putative uncharacterized
           protein - Bacillus cereus subsp. cytotoxis NVH 391-98
          Length = 240

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -1

Query: 351 ICHLIIFCVGSCDTSYFSISLRFETAETVAHWKTVV 244
           IC +IIFC+GS    YFS+    +T +TVA W   V
Sbjct: 116 ICAIIIFCIGSLIGYYFSM----KTVDTVALWIAAV 147


>UniRef50_A5I547 Cluster: Rhodanese-like protein precursor; n=4;
           Clostridium botulinum|Rep: Rhodanese-like protein
           precursor - Clostridium botulinum A str. ATCC 3502
          Length = 324

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 98  RKQKEICNVYTSITGKKTN*VLTLCIKGVRSS*VE-VLDVEHFLCIQNYITTVFQWATVS 274
           + QKEI  + T    KK + +LT C  G+RS+ +  VL +  +  ++NY  + + W   S
Sbjct: 259 KSQKEIEGLLTEAGIKKDDEILTYCTAGIRSAHLALVLKMCGYNNVKNYDGSFYMW---S 315

Query: 275 AVSNLKL 295
           A  NL++
Sbjct: 316 ADKNLQI 322


>UniRef50_A5GEA1 Cluster: Rhodanese domain protein precursor; n=1;
           Geobacter uraniumreducens Rf4|Rep: Rhodanese domain
           protein precursor - Geobacter uraniumreducens Rf4
          Length = 321

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +2

Query: 98  RKQKEICNVYTSITGKKTN*VLTLCIKGVRSS*VE-VLDVEHFLCIQNYITTVFQWA 265
           + Q E+  ++T+   KKT+ +++ C KG+RS  +  +L +  +    NY  + ++WA
Sbjct: 257 KSQDELEALFTAAGIKKTDTIVSYCTKGIRSGLMTMILRMAGYSKAVNYDASFYEWA 313


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,070,858
Number of Sequences: 1657284
Number of extensions: 9387520
Number of successful extensions: 20420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20416
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)