Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1593X
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0516 - 18246439-18246582,18246763-18246899,18247067-182470...    28   4.8  
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629...    28   6.4  

>09_04_0516 -
           18246439-18246582,18246763-18246899,18247067-18247097,
           18248097-18248194,18248222-18248291,18248704-18248835,
           18249213-18249386
          Length = 261

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 497 FFCTFNGSHELCSPKEFNTFKLFM 426
           FF    G H LC+PKE++  K+ +
Sbjct: 38  FFVESEGHHNLCTPKEWSFIKILI 61


>09_04_0518 -
           18261420-18261953,18262054-18262626,18262736-18262948,
           18263379-18263510,18263591-18263731,18263899-18264120
          Length = 604

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 509 SQTKFFCTFNGSHELCSPKEFNTFK 435
           S   +F    G H LCSPKE++  K
Sbjct: 50  SPAAYFSESEGHHNLCSPKEWSFIK 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,914
Number of Sequences: 37544
Number of extensions: 231358
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)