Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1593X
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    29   2.5  
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    27   10.0 
AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      27   10.0 
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
          protein 5 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 35 WYWWILVHIISITEIL--PCSFY 97
          W+WW+LV I+S+  ++   C+ Y
Sbjct: 4  WWWWVLVAILSLCAVILSSCALY 26


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 186 EALKSKFWMWNIFYVFKIILQQFSNG 263
           EA++  FW   I+Y FK ++Q + +G
Sbjct: 823 EAMEKFFWERAIYYSFKALVQGYGDG 848


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 480 IKCAEKLSL*KTPKLFNPKLPSIPRTMSSLGSSEKIS 590
           + CAE  S   TP  FNP  PS  R  + +  S  +S
Sbjct: 3   VDCAETFSQPCTPLNFNPMTPSTSRVSTPVRPSSTMS 39


>AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical
           protein K12B6.1 protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 247 NSFPMGHCLSCFKSQANAEIRSITGPHAKNDEV 345
           N   +G+C+       N +IRSITG   K+  V
Sbjct: 208 NVLTIGNCVHYLYDDTNIDIRSITGEGGKSSAV 240


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 480 IKCAEKLSL*KTPKLFNPKLPSIPRTMSSLGSSEKIS 590
           + CAE  S   TP  FNP  PS  R  + +  S  +S
Sbjct: 3   VDCAETFSQPCTPLNFNPMTPSTSRVSTPVRPSSTMS 39


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 454 FGEQSSCDPLNVQK---NLVCEKLLNYSTQSYHQFHGQC 561
           FG   SCDPL+ Q    NLVC   LN+S     +F   C
Sbjct: 12  FGLARSCDPLHAQAHGINLVCCS-LNHSLTPSCEFSSLC 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,382
Number of Sequences: 27780
Number of extensions: 245829
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)