Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1587
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac...    27   2.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.8  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   3.8  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    26   6.6  

>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = +1

Query: 256 PIYCQILDSD----PNKFVY-QDAVRAFTMIVDLWQYEEGTVPGIVIILNMKDVSLGHIS 420
           P  C  L+S+     N+ +Y Q A   F  +VD  + E G +  I + +   D    ++ 
Sbjct: 44  PTACNFLESNLIAGKNRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVC 103

Query: 421 QIDLI 435
           ++DL+
Sbjct: 104 ELDLV 108


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 33  AVNYLNHIKYCIVVRKCNMTIEAISVQYEYKKH-VNIRQEMVENLREWIRKQP 188
           A N  N I    + +    T+E +     YKK+ +NI + +  +L EW R  P
Sbjct: 454 ASNVHNIISMSKIAKIMGKTMEQLYGTVNYKKNPINIIESLRADLEEWKRSLP 506


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 78  KCNMTIEAISVQYEYKKHVNIRQEMVENLREWIRKQPHLP 197
           K N  I  ISV+ +Y +H N     VE +++ I K P +P
Sbjct: 65  KLNELIREISVRGKYFRHAN---TFVEKIKDLIFKTPVIP 101


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 143 SYIHMFLIFILN*DRFDCHITLSYNNTVFNMIQVIH 36
           ++ + F  FI++  ++  H  L YN  ++NMI   H
Sbjct: 131 AFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAHH 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,533
Number of Sequences: 5004
Number of extensions: 60262
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)