Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1587
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0734 - 6078023-6078203,6078645-6078866,6079323-6079390,607...    31   0.97 
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420...    28   9.1  

>11_01_0734 -
           6078023-6078203,6078645-6078866,6079323-6079390,
           6079919-6079981,6095129-6095782
          Length = 395

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 189 AAASESIHVNSRPFLVLYSHVSYIHIELRSLRLSYYTFLQQYSI 58
           ++ S SIHVN+R    +Y+ ++ +  E+ +  + +Y FL  + +
Sbjct: 265 SSLSSSIHVNARNVEAMYTAITMVVQEMHARHVKHYNFLMLHGL 308


>03_01_0570 -
           4205739-4205776,4205846-4205897,4205939-4206067,
           4206183-4206258,4206360-4206412,4206494-4206555,
           4206624-4206734,4206813-4206979,4207089-4207268,
           4207598-4207687,4207773-4207921,4208367-4208501,
           4208575-4208630,4208790-4208823,4209409-4209519
          Length = 480

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 45  LNHIKYCIVVRKCNMTIEAISVQYEYKKHVNIRQEMV 155
           +NH KY I VRK +  I +    Y  +K V  R   V
Sbjct: 191 INHSKYLIAVRKFHFDIVSTVCSYNTEKEVEDRNTTV 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,290
Number of Sequences: 37544
Number of extensions: 326567
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)