Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1587
         (747 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic pr...    25   1.9  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    24   5.7  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   7.6  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   7.6  

>AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic
           protein.
          Length = 379

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 126 KHVNIRQEMVENLREWIRKQPHL 194
           +HV +R+   E    W++KQP L
Sbjct: 216 EHVRLRRNAAERHDSWVQKQPLL 238


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 36   VNYLNHIKYCIVVRKCNMTIEAISVQY 116
            ++YLN I  CI   +C M I A+   Y
Sbjct: 1655 LDYLNMIFICIFSSECLMKIFALRYHY 1681


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 159 SRPFLVLYSHVSYIHIELRSLRLS 88
           +RPF++ Y +V  +  +   LRLS
Sbjct: 4   NRPFVIYYQNVRGLRTKYNELRLS 27


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 168 HVNSRPFLVLYSHVSYIHIELRSLRLSYYTFLQQ 67
           H+N R F + YS         + L LSY  +  Q
Sbjct: 875 HLNPRDFSLQYSGTFLRDFAFKELELSYRMYFSQ 908


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,060
Number of Sequences: 2352
Number of extensions: 14930
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)